Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07379 Brassica carinata HOM05D001598 ORTHO05D002757 1.2e-92 343.2 174 100.0
BcaC01g06921 Brassica carinata HOM05D001598 ORTHO05D002757 8.7e-88 327.0 173 97.1
C03p64600 Brassica napus HOM05D001598 ORTHO05D002757 8.7e-88 327.0 173 97.1
BolC3t18718H Brassica oleracea HOM05D001598 ORTHO05D002757 8.7e-88 327.0 173 97.1
A06p28990 Brassica napus HOM05D001598 ORTHO05D002757 5.8e-76 287.7 173 88.4
BraA06t25844Z Brassica rapa HOM05D001598 ORTHO05D002757 5.8e-76 287.7 173 88.4
Sp2g25470 Schrenkiella parvula HOM05D001598 ORTHO05D002757 4.8e-70 268.1 176 83.0
Carub.0008s2296 Capsella rubella HOM05D001598 ORTHO05D002757 2.2e-67 259.2 180 77.8
CARHR276050 Cardamine hirsuta HOM05D001598 ORTHO05D002757 5.5e-66 254.6 178 78.7
AT5G62270 Arabidopsis thaliana HOM05D001598 ORTHO05D002757 2.1e-65 252.7 178 76.4
AL8G39090 Arabidopsis lyrata HOM05D001598 ORTHO05D002757 3.6e-65 251.9 180 76.1
Thhalv10004417m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 8.7e-64 247.3 163 81.6
BolC2t12266H Brassica oleracea HOM05D001598 ORTHO05D002757 1.7e-59 233.0 178 70.8
BcaNung06719 Brassica carinata HOM05D001598 ORTHO05D002757 1.9e-58 229.6 115 100.0
A02p42210 Brassica napus HOM05D001598 ORTHO05D002757 1.1e-55 220.3 178 68.0
C02p62070 Brassica napus HOM05D001598 ORTHO05D002757 4.4e-55 218.4 179 68.2
BraA02t09150Z Brassica rapa HOM05D001598 ORTHO05D002757 4.4e-55 218.4 179 68.2
BcaC03g18140 Brassica carinata HOM05D001598 ORTHO05D002757 1.3e-54 216.9 178 68.0
Aa31LG11G1330 Aethionema arabicum HOM05D001598 ORTHO05D002757 3.1e-53 212.2 173 65.9
BcaB07g29787 Brassica carinata HOM05D001598 ORTHO05D002757 9.1e-53 210.7 192 60.9
Thhalv10000666m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 1.7e-51 206.5 147 74.1
THA.LOC104820518 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 7.0e-45 184.5 166 59.6
Thhalv10026429m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 9.4e-42 174.1 151 64.9
Thhalv10010049m.g Eutrema salsugineum HOM05D001598 ORTHO05D002757 1.4e-40 170.2 115 75.7
THA.LOC104821398 Tarenaya hassleriana HOM05D001598 ORTHO05D002757 1.5e-39 166.8 166 54.8
Cpa.g.sc48.118 Carica papaya HOM05D001598 ORTHO05D002757 2.5e-34 149.4 173 47.4
FAN11G0362 Fragaria x ananassa HOM05D001598 ORTHO05D002757 6.1e-33 144.8 173 48.0
Atru.chr4.1342 Acer truncatum HOM05D001598 ORTHO05D002757 1.8e-32 143.3 162 50.6
FvH4_3g26250 Fragaria vesca HOM05D001598 ORTHO05D002757 1.8e-32 143.3 173 47.4
Atru.chr11.1498 Acer truncatum HOM05D001598 ORTHO05D002757 2.3e-32 142.9 163 51.5
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.0e-32 142.5 162 50.0
CsaV3_3G002830 Cucumis sativus L. HOM05D001598 ORTHO05D002757 5.2e-32 141.7 159 50.9
FAN16G3208 Fragaria x ananassa HOM05D001598 ORTHO05D002757 6.8e-32 141.4 162 49.4
Manes.11G105600 Manihot esculenta HOM05D001598 ORTHO05D002757 8.8e-32 141.0 159 50.3
ClCG10G002790 Citrullus lanatus HOM05D001598 ORTHO05D002757 1.5e-31 140.2 159 54.1
MELO3C013949.2 Cucumis melo HOM05D001598 ORTHO05D002757 3.4e-31 139.0 159 51.6
RcHm_v2.0_Chr5g0048751 Rosa chinensis HOM05D001598 ORTHO05D002757 7.5e-31 137.9 170 46.5
FAN25G3483 Fragaria x ananassa HOM05D001598 ORTHO05D002757 1.3e-30 137.1 162 48.8
Prupe.4G179500 Prunus persica HOM05D001598 ORTHO05D002757 8.3e-30 134.4 170 46.5
Ciclev10020578m.g Citrus clementina HOM05D001598 ORTHO05D002757 1.1e-29 134.0 159 50.3
Nn7g37454 Nelumbo nucifera HOM05D001598 ORTHO05D002757 1.4e-29 133.7 165 50.3
Sed0000960 Sechium edule HOM05D001598 ORTHO05D002757 1.4e-29 133.7 159 50.9
QL03p060335 Quercus lobata HOM05D001598 ORTHO05D002757 2.4e-29 132.9 157 51.6
QL10p006125 Quercus lobata HOM05D001598 ORTHO05D002757 2.4e-29 132.9 157 51.0
Nn1g09429 Nelumbo nucifera HOM05D001598 ORTHO05D002757 3.1e-29 132.5 165 50.3
Potri.007G133900 Populus trichocarpa HOM05D001598 ORTHO05D002757 9.1e-29 131.0 165 46.7
CiPaw.01G173400 Carya illinoinensis HOM05D001598 ORTHO05D002757 1.6e-28 130.2 157 48.4
Haze_02583 Corylus avellana HOM05D002054 ORTHO05D005362 1.6e-28 130.2 165 46.7
Dinv44166 Davidia involucrata HOM05D001598 ORTHO05D002757 2.0e-28 129.8 160 50.0
Rhsim12G0173100 Rhododendron simsii HOM05D001598 ORTHO05D002757 2.7e-28 129.4 162 49.4
TWI36G1000 Tripterygium wilfordii HOM05D001598 ORTHO05D002757 4.5e-28 128.6 162 45.7
Cfa015220 Carpinus fangiana HOM05D001598 ORTHO05D002757 5.9e-28 128.3 165 46.1
vmacro16663 Vaccinium macrocarpon HOM05D001598 ORTHO05D002757 5.9e-28 128.3 161 48.4
HPP92_015460 Vanilla planifolia HOM05D001598 ORTHO05D002757 5.9e-28 128.3 178 45.5
GSVIVG01038094001 Vitis vinifera HOM05D001598 ORTHO05D002757 5.9e-28 128.3 157 51.0
Sabra07G0108700 Salix brachista HOM05D001598 ORTHO05D002757 7.7e-28 127.9 165 45.5
Sabra07G0121000 Salix brachista HOM05D001598 ORTHO05D002757 7.7e-28 127.9 165 45.5
Actinidia36797 Actinidia chinensis HOM05D001598 ORTHO05D002757 6.5e-27 124.8 152 48.7
Thecc.04G200200 Theobroma cacao HOM05D001598 ORTHO05D002757 6.5e-27 124.8 128 50.8
Eucgr.H00336 Eucalyptus grandis HOM05D001598 ORTHO05D002757 1.1e-26 124.0 160 45.6
CSS0041589 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D002757 4.2e-26 122.1 131 51.1
TAR626G1975 Trochodendron aralioides HOM05D001598 ORTHO05D002757 2.8e-25 119.4 124 53.2
Cc01_g06370 Coffea canephora HOM05D001598 ORTHO05D002757 4.7e-25 118.6 174 46.6
COL.COLO4_20174 Corchorus olitorius HOM05D001598 ORTHO05D002757 4.7e-25 118.6 163 42.3
MBI07_g03083_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D002757 4.7e-25 118.6 164 42.7
Solyc05g056510.3 Solanum lycopersicum HOM05D001598 ORTHO05D002757 4.7e-25 118.6 147 49.7
Sopen05g034910 Solanum pennellii HOM05D001598 ORTHO05D002757 4.7e-25 118.6 147 49.7
Lj5A679G28 Lonicera japonica HOM05D001598 ORTHO05D002757 8.0e-25 117.9 172 46.5
MD03G1229800 Malus domestica HOM05D001598 ORTHO05D002757 1.4e-24 117.1 190 40.0
MD11G1250300 Malus domestica HOM05D001598 ORTHO05D002757 1.4e-24 117.1 174 42.0
unitig_699.g19728 Utricularia gibba HOM05D001598 ORTHO05D002757 1.4e-24 117.1 158 47.5
Sc25g0002290 Simmondsia chinensis HOM05D001598 ORTHO05D002757 1.8e-24 116.7 158 44.3
Nitab4.5_0000496g0060 Nicotiana tabacum HOM05D001598 ORTHO05D002757 3.0e-24 115.9 134 50.0
arahy.Tifrunner.gnm1.ann1.9TX8HM Arachis hypogaea HOM05D001598 ORTHO05D002757 5.2e-24 115.2 134 49.3
Potri.017G017901 Populus trichocarpa HOM05D001598 ORTHO05D002757 6.8e-24 114.8 170 42.4
MSTRG.21240 Avicennia marina HOM05D001598 ORTHO05D002757 1.2e-23 114.0 148 47.3
Nitab4.5_0002704g0060 Nicotiana tabacum HOM05D001598 ORTHO05D002757 1.5e-23 113.6 134 51.5
arahy.Tifrunner.gnm1.ann1.F1G1DC Arachis hypogaea HOM05D001598 ORTHO05D002757 2.0e-23 113.2 134 48.5
Duzib212G0742 Durio zibethinus HOM05D001598 ORTHO05D002757 5.7e-23 111.7 126 46.8
ATR0757G133 Amborella trichopoda HOM05D001598 ORTHO05D002757 4.9e-22 108.6 179 39.7
CANSAT80G0504 Cannabis sativa HOM05D001598 ORTHO05D002757 6.3e-22 108.2 161 42.2
Peaxi162Scf00007g01329 Petunia axillaris HOM05D001598 ORTHO05D002757 1.1e-21 107.5 165 47.3
Zm00001eb150640 Zea mays HOM05D001598 ORTHO05D002757 2.4e-21 106.3 118 50.0
CAN.G1156.51 Capsicum annuum HOM05D001598 ORTHO05D002757 3.1e-21 105.9 140 46.4
PSO782G1531 Papaver somniferum HOM05D001598 ORTHO05D002757 4.1e-21 105.5 168 40.5
SGA_v2.0_scaffold25G11133 Striga asiatica HOM05D001598 ORTHO05D002757 4.1e-21 105.5 157 44.6
PGR142G2642 Punica granatum HOM05D001598 ORTHO05D002757 1.2e-20 104.0 163 43.6
Hund10980 Selenicereus undatus HOM05D001598 ORTHO05D002757 1.2e-20 104.0 133 47.4
Psat5g075120 Pisum sativum HOM05D001598 ORTHO05D002757 1.6e-20 103.6 147 41.5
Os01g0801700 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D002757 2.0e-20 103.2 116 50.0
Gohir.D02G024800 Gossypium hirsutum HOM05D001598 ORTHO05D002757 2.7e-20 102.8 163 39.3
Gorai.005G030700 Gossypium raimondii HOM05D001598 ORTHO05D002757 2.7e-20 102.8 163 39.3
Gohir.A02G020800 Gossypium hirsutum HOM05D001598 ORTHO05D002757 4.5e-20 102.1 163 38.7
Ca_01999_v3 Cicer arietinum L. HOM05D001598 ORTHO05D002757 5.9e-20 101.7 131 41.2
Migut.D00847 Erythranthe guttata HOM05D001598 ORTHO05D002757 7.8e-20 101.3 162 40.1
TPR.G31851 Trifolium pratense HOM05D001598 ORTHO05D002757 1.3e-19 100.5 132 40.9
Lalb_Chr18g0052141 Lupinus albus HOM05D001598 ORTHO05D002757 1.7e-19 100.1 161 37.9
VMungo1309G2065 Vigna mungo HOM05D001598 ORTHO05D002757 1.7e-19 100.1 127 41.7
Phvul.009G242000 Phaseolus vulgaris HOM05D001598 ORTHO05D002757 3.8e-19 99.0 141 41.8
ECA236G0081 Erigeron canadensis HOM05D001598 ORTHO05D002757 1.1e-18 97.4 134 40.3
PSO063G3912 Papaver somniferum HOM05D001598 ORTHO05D002757 1.5e-18 97.1 168 39.3
SGA_v2.0_scaffold28G11982 Striga asiatica HOM05D001598 ORTHO05D002757 1.5e-18 97.1 128 48.4
DCAR_013251 Daucus carota HOM05D001598 ORTHO05D002757 1.9e-18 96.7 153 42.5
Glyma.15G158100 Glycine max HOM05D001598 ORTHO05D002757 1.9e-18 96.7 127 42.5
Lj6g0023615 Lotus japonicus HOM05D001598 ORTHO05D002757 3.3e-18 95.9 122 46.7
Glyma.09G051800 Glycine max HOM05D001598 ORTHO05D002757 9.5e-18 94.4 127 40.2
Oeu050015.1 Olea europaea HOM05D001598 ORTHO05D002757 1.2e-17 94.0 183 41.0
Lsat_1_v5_gn_8_69520 Lactuca sativa HOM05D001598 ORTHO05D002757 4.7e-17 92.0 150 39.3
Lsat_1_v5_gn_8_112440 Lactuca sativa HOM05D001598 ORTHO05D002757 5.2e-16 88.6 170 37.1
CDE03G0379 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 1.5e-15 87.0 147 42.2
Aqoxy7G03836 Aquilegia oxysepala HOM05D001598 ORTHO05D002757 7.5e-15 84.7 165 40.0
CDE06G0993 Ceratophyllum demersum HOM05D001598 ORTHO05D002757 2.2e-14 83.2 147 42.2
EL10Ac3g07464 Beta vulgaris HOM05D001598 ORTHO05D002757 4.9e-14 82.0 128 42.2
Ah.13g078030 Amaranthus hybridus HOM05D001598 ORTHO05D002757 6.4e-14 81.6 173 38.7
Haze_01397 Corylus avellana HOM05D001598 ORTHO05D002757 1.8e-13 80.1 62 61.3
AUR62018568 Chenopodium quinoa HOM05D001598 ORTHO05D002757 1.2e-12 77.4 175 36.6
AUR62020850 Chenopodium quinoa HOM05D001598 ORTHO05D002757 2.7e-12 76.3 166 38.0
SHI53821 Sapria himalayana HOM05D001598 ORTHO05D002757 5.0e-11 72.0 163 32.5
SGA_v2.0_scaffold154G37192 Striga asiatica HOM05D001598 ORTHO05D002757 5.6e-10 68.6 132 40.9
SEGI_28205 Sequoiadendron giganteum HOM05D001598 ORTHO05D002757 1.6e-09 67.0 118 38.1
Oeu027581.1 Olea europaea HOM05D001598 ORTHO05D002757 4.9e-06 55.5 142 33.1


User provided reference genes

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