Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07323 Brassica carinata HOM05D003893 ORTHO05D005167 4.4e-33 144.1 74 100.0
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 2.9e-32 141.4 73 97.3
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 2.9e-32 141.4 73 97.3
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 2.4e-31 138.3 71 98.6
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 2.4e-31 138.3 71 98.6
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 5.4e-31 137.1 71 98.6
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 7.1e-31 136.7 71 95.8
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 2.7e-30 134.8 71 97.2
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 8.7e-29 129.8 73 89.0
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 1.5e-28 129.0 73 89.0
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 2.5e-28 128.3 73 87.7
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 2.5e-28 128.3 73 87.7
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 1.2e-25 119.4 73 83.6
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 2.0e-25 118.6 73 80.8
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 2.6e-25 118.2 73 79.5
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 7.9e-14 80.1 73 60.3
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 6.7e-13 77.0 74 55.4
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 6.7e-13 77.0 63 60.3
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 5.6e-12 73.9 74 54.1
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 9.6e-12 73.2 64 60.9
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 1.3e-11 72.8 60 63.3
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 1.3e-11 72.8 61 59.0
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 2.8e-11 71.6 60 61.7
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 6.2e-11 70.5 61 57.4
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 1.4e-10 69.3 64 57.8
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 1.8e-10 68.9 63 54.0
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 1.8e-10 68.9 64 54.7
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 2.4e-10 68.6 58 63.8
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 2.4e-10 68.6 64 57.8
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 3.1e-10 68.2 63 54.0
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 3.1e-10 68.2 64 56.2
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 4.0e-10 67.8 63 54.0
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 4.0e-10 67.8 64 56.2
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 6.9e-10 67.0 64 56.2
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 6.9e-10 67.0 61 57.4
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 9.0e-10 66.6 59 55.9
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 1.2e-09 66.2 61 59.0
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 2.6e-09 65.1 63 55.6
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 2.6e-09 65.1 60 55.0
Haze_08367 Corylus avellana HOM05D003893 ORTHO05D005167 4.5e-09 64.3 62 56.5
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 4.5e-09 64.3 59 64.4
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 5.8e-09 63.9 59 64.4
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 5.8e-09 63.9 59 64.4
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 7.6e-09 63.5 57 54.4
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 1.0e-08 63.2 58 62.1
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 1.0e-08 63.2 64 53.1
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 1.3e-08 62.8 60 53.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 1.3e-08 62.8 45 64.4
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 2.2e-08 62.0 60 48.3
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 3.8e-08 61.2 45 62.2
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 3.8e-08 61.2 59 57.6
Oeu054285.1 Olea europaea HOM05D003893 ORTHO05D005167 6.5e-08 60.5 60 51.7
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 8.4e-08 60.1 61 49.2
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 8.4e-08 60.1 46 65.2
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 8.4e-08 60.1 60 56.7
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 2.5e-07 58.5 59 52.5
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 3.2e-07 58.2 63 47.6
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 4.2e-07 57.8 59 50.8
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 5.5e-07 57.4 64 48.4
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 5.5e-07 57.4 61 49.2
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 9.3e-07 56.6 42 61.9
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 1.2e-06 56.2 64 46.9
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 1.6e-06 55.8 61 52.5
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 2.1e-06 55.5 63 49.2
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 2.1e-06 55.5 60 48.3
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 2.7e-06 55.1 47 55.3
Ca_30504_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 2.7e-06 55.1 47 55.3
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 2.7e-06 55.1 51 56.9
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 3.5e-06 54.7 50 52.0
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 3.5e-06 54.7 61 44.3
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 3.5e-06 54.7 40 62.5
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.5e-06 54.7 59 50.8
vmacro17755 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 3.5e-06 54.7 58 50.0
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 4.6e-06 54.3 61 49.2
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 4.6e-06 54.3 61 49.2
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 6.0e-06 53.9 42 59.5
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 7.9e-06 53.5 64 43.8


User provided reference genes

Program Settings