Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06974 Brassica carinata HOM05D002498 ORTHO05D002553 1.9e-134 482.6 272 100.0
A06p13370 Brassica napus HOM05D002498 ORTHO05D002553 1.4e-95 353.6 274 78.5
BraA06t24489Z Brassica rapa HOM05D002498 ORTHO05D002553 1.4e-95 353.6 274 78.5
Sp1g15580 Schrenkiella parvula HOM05D002498 ORTHO05D002553 1.9e-89 333.2 293 76.5
C05p15830 Brassica napus HOM05D002498 ORTHO05D002553 4.2e-89 332.0 270 78.1
BolC5t30289H Brassica oleracea HOM05D002498 ORTHO05D002553 4.2e-89 332.0 270 78.1
AL1G29720 Arabidopsis lyrata HOM05D002498 ORTHO05D002553 3.7e-77 292.4 286 71.7
CARHR018030 Cardamine hirsuta HOM05D002498 ORTHO05D002553 7.2e-73 278.1 268 72.0
AT1G17440 Arabidopsis thaliana HOM05D002498 ORTHO05D002553 4.4e-70 268.9 294 67.3
Aa31LG4G2990 Aethionema arabicum HOM05D002498 ORTHO05D002553 7.7e-67 258.1 303 62.7
Thhalv10006997m.g Eutrema salsugineum HOM05D002498 ORTHO05D002553 4.0e-63 245.7 302 62.9
THA.LOC104813958 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 2.2e-61 240.0 308 56.2
THA.LOC104808053 Tarenaya hassleriana HOM05D002498 ORTHO05D002553 1.1e-60 237.7 255 62.0
Gohir.A06G193600 Gossypium hirsutum HOM05D002498 ORTHO05D002553 1.0e-42 177.9 187 65.8
Gorai.010G235100 Gossypium raimondii HOM05D002498 ORTHO05D002553 1.3e-42 177.6 189 65.6
Gohir.D06G201400 Gossypium hirsutum HOM05D002498 ORTHO05D002553 3.9e-42 176.0 187 65.8
Carub.0001s1720 Capsella rubella HOM05D002498 ORTHO05D002553 5.1e-42 175.6 313 51.4
Thecc.06G119300 Theobroma cacao HOM05D002498 ORTHO05D002553 2.5e-41 173.3 193 62.2
Gohir.D10G055000 Gossypium hirsutum HOM05D002498 ORTHO05D002553 6.2e-40 168.7 193 63.2
Gohir.A10G053200 Gossypium hirsutum HOM05D002498 ORTHO05D002553 8.1e-40 168.3 193 63.2
Duzib235G0745 Durio zibethinus HOM05D002498 ORTHO05D002553 2.3e-39 166.8 195 60.5
Potri.001G169900 Populus trichocarpa HOM05D002498 ORTHO05D002553 5.2e-39 165.6 275 48.4
C04p16470 Brassica napus HOM05D002498 ORTHO05D039468 6.8e-39 165.2 250 52.0
Gorai.011G058700 Gossypium raimondii HOM05D002498 ORTHO05D002553 1.5e-38 164.1 217 58.1
Potri.003G064100 Populus trichocarpa HOM05D002498 ORTHO05D002553 2.2e-37 160.2 182 61.0
Ciclev10025234m.g Citrus clementina HOM05D002498 ORTHO05D002553 3.8e-37 159.5 179 58.1
Duzib192G0999 Durio zibethinus HOM05D002498 ORTHO05D002553 2.4e-36 156.8 187 61.5
Atru.chr1.3950 Acer truncatum HOM05D002498 ORTHO05D002553 3.2e-36 156.4 185 58.9
CANSAT56G2749 Cannabis sativa HOM05D002498 ORTHO05D002553 7.8e-35 151.8 221 51.6
Sabra01G0141500 Salix brachista HOM05D002498 ORTHO05D002553 3.9e-34 149.4 201 55.2
MD17G1168400 Malus domestica HOM05D002498 ORTHO05D002553 8.6e-34 148.3 288 43.4
Phvul.010G130700 Phaseolus vulgaris HOM05D002498 ORTHO05D002553 8.6e-34 148.3 249 47.0
Sabra03G0037700 Salix brachista HOM05D002498 ORTHO05D002553 1.9e-33 147.1 164 59.8
CiPaw.01G219200 Carya illinoinensis HOM05D002498 ORTHO05D002553 2.5e-33 146.7 181 55.2
COL.COLO4_30763 Corchorus olitorius HOM05D002498 ORTHO05D002553 3.3e-33 146.4 194 56.2
MD09G1184100 Malus domestica HOM05D002498 ORTHO05D002553 5.6e-33 145.6 301 41.5
Sed0015077 Sechium edule HOM05D002498 ORTHO05D002553 5.6e-33 145.6 216 47.7
Dinv30674 Davidia involucrata HOM05D002498 ORTHO05D002553 9.6e-33 144.8 195 52.3
Dinv34334 Davidia involucrata HOM05D002498 ORTHO05D002553 9.6e-33 144.8 195 52.3
Prupe.3G042400 Prunus persica HOM05D002498 ORTHO05D002553 9.6e-33 144.8 312 42.6
Actinidia39082 Actinidia chinensis HOM05D002498 ORTHO05D002553 6.2e-32 142.1 288 39.2
CAN.G862.29 Capsicum annuum HOM05D002498 ORTHO05D002553 1.1e-31 141.4 206 52.4
TAR636G1942 Trochodendron aralioides HOM05D002498 ORTHO05D002553 1.1e-31 141.4 297 43.4
Hma1.2p1_0496F.1_g166220 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 1.4e-31 141.0 219 47.5
A09p60370 Brassica napus HOM05D002498 ORTHO05D002553 3.1e-31 139.8 284 43.7
BraA09t41409Z Brassica rapa HOM05D002498 ORTHO05D002553 3.1e-31 139.8 284 43.7
Glyma.07G037600 Glycine max HOM05D002498 ORTHO05D002553 4.0e-31 139.4 177 52.5
VMungo0331G0210 Vigna mungo HOM05D002498 ORTHO05D002553 2.0e-30 137.1 176 51.1
CsaV3_7G034500 Cucumis sativus L. HOM05D002498 ORTHO05D002553 7.6e-30 135.2 301 44.2
MELO3C024357.2 Cucumis melo HOM05D002498 ORTHO05D002553 1.3e-29 134.4 185 53.5
GSVIVG01016770001 Vitis vinifera HOM05D002498 ORTHO05D002553 1.7e-29 134.0 249 45.4
Actinidia26030 Actinidia chinensis HOM05D002498 ORTHO05D002553 3.8e-29 132.9 287 39.4
ClCG09G000950 Citrullus lanatus HOM05D002498 ORTHO05D002553 8.4e-29 131.7 294 42.2
Manes.04G144200 Manihot esculenta HOM05D002498 ORTHO05D002553 8.4e-29 131.7 188 54.3
FAN05G3736 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.1e-28 131.3 279 45.2
BolC8t51935H Brassica oleracea HOM05D002498 ORTHO05D002553 5.4e-28 129.0 207 49.3
Ca_23371_v3 Cicer arietinum L. HOM05D002498 ORTHO05D002553 7.1e-28 128.6 249 45.4
PGR119G0909 Punica granatum HOM05D002498 ORTHO05D002553 2.1e-27 127.1 200 47.5
QL05p007807 Quercus lobata HOM05D002498 ORTHO05D002553 3.5e-27 126.3 217 47.9
Nitab4.5_0012529g0010 Nicotiana tabacum HOM05D002498 ORTHO05D002553 4.6e-27 125.9 208 48.1
RcHm_v2.0_Chr2g0145171 Rosa chinensis HOM05D002498 ORTHO05D002553 6.0e-27 125.6 144 56.9
Hma1.2p1_0291F.1_g115140 Hydrangea macrophylla HOM05D002498 ORTHO05D002553 1.0e-26 124.8 278 40.6
Lalb_Chr04g0263441 Lupinus albus HOM05D002498 ORTHO05D002553 1.0e-26 124.8 145 52.4
Lsat_1_v5_gn_1_38060 Lactuca sativa HOM05D002498 ORTHO05D002553 3.0e-26 123.2 183 53.0
Lj5C37T8 Lonicera japonica HOM05D002498 ORTHO05D002553 5.1e-26 122.5 270 41.1
Lalb_Chr01g0013581 Lupinus albus HOM05D002498 ORTHO05D002553 8.7e-26 121.7 178 50.6
Oeu007562.1 Olea europaea HOM05D002498 ORTHO05D002553 1.1e-25 121.3 202 45.5
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 5.6e-25 119.0 277 43.7
Manes.11G020700 Manihot esculenta HOM05D002498 ORTHO05D002553 7.3e-25 118.6 179 52.0
BcaC02g11374 Brassica carinata HOM05D003322 ORTHO05D039468 9.6e-25 118.2 145 57.9
DCAR_016127 Daucus carota HOM05D002498 ORTHO05D002553 9.6e-25 118.2 152 53.9
Lj3g0023911 Lotus japonicus HOM05D002498 ORTHO05D002553 1.3e-24 117.9 142 56.3
HanXRQChr04g0094561 Helianthus annuus HOM05D002498 ORTHO05D002553 2.1e-24 117.1 269 41.6
Medtr8g020480 Medicago truncatula HOM05D002498 ORTHO05D002553 8.1e-24 115.2 187 49.2
HPP92_026973 Vanilla planifolia HOM05D002498 ORTHO05D002553 1.8e-23 114.0 276 41.3
SGA_v2.0_scaffold71G23856 Striga asiatica HOM05D002498 ORTHO05D002553 3.1e-23 113.2 263 36.5
C08p43860 Brassica napus HOM05D002498 ORTHO05D002553 4.0e-23 112.8 202 48.5
Migut.I01070 Erythranthe guttata HOM05D002498 ORTHO05D002553 9.0e-23 111.7 203 45.3
Solyc03g122020.4 Solanum lycopersicum HOM05D002498 ORTHO05D002553 1.5e-22 110.9 181 46.4
Sopen03g040820 Solanum pennellii HOM05D002498 ORTHO05D002553 1.5e-22 110.9 181 46.4
Cpa.g.sc25.112 Carica papaya HOM05D002498 ORTHO05D002553 7.6e-22 108.6 109 67.0
Eucgr.F03174 Eucalyptus grandis HOM05D002498 ORTHO05D002553 9.9e-22 108.2 139 54.7
MSTRG.14437 Avicennia marina HOM05D002498 ORTHO05D002553 2.9e-21 106.7 113 58.4
PGSC0003DMG400002568 Solanum tuberosum HOM05D002498 ORTHO05D002553 3.8e-21 106.3 183 44.8
TAR633G2028 Trochodendron aralioides HOM05D002498 ORTHO05D002553 1.4e-20 104.4 283 38.5
SalBow6G7152 Salvia bowleyana HOM05D002498 ORTHO05D002553 5.4e-20 102.4 106 57.5
Sc12g0010550 Simmondsia chinensis HOM05D002498 ORTHO05D002553 3.5e-19 99.8 110 55.5
FAN09G3304 Fragaria x ananassa HOM05D002498 ORTHO05D002553 4.6e-19 99.4 274 42.0
ECA247G3107 Erigeron canadensis HOM05D002498 ORTHO05D002553 6.0e-19 99.0 139 53.2
Psat4g182480 Pisum sativum HOM05D002498 ORTHO05D002553 6.0e-19 99.0 213 41.8
Cc11_g03670 Coffea canephora HOM05D002498 ORTHO05D002553 1.3e-18 97.8 118 59.3
FAN14G0943 Fragaria x ananassa HOM05D002498 ORTHO05D002553 1.3e-18 97.8 282 40.4
FvH4_6g34640 Fragaria vesca HOM05D002498 ORTHO05D002553 2.3e-18 97.1 292 39.4
Aqoxy1G00838 Aquilegia oxysepala HOM05D002498 ORTHO05D002553 1.1e-17 94.7 153 49.7
TPR.G32477 Trifolium pratense HOM05D002498 ORTHO05D002553 1.1e-17 94.7 176 46.0
CDE09G0028 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 1.5e-17 94.4 136 48.5
SalBow6G1630 Salvia bowleyana HOM05D002498 ORTHO05D002553 9.6e-17 91.7 100 55.0
PSO384G1420 Papaver somniferum HOM05D002498 ORTHO05D002553 1.6e-16 90.9 254 37.4
arahy.Tifrunner.gnm1.ann1.U78AI9 Arachis hypogaea HOM05D002498 ORTHO05D002553 4.8e-16 89.4 145 49.7
CDE02G1135 Ceratophyllum demersum HOM05D002498 ORTHO05D002553 4.0e-15 86.3 253 37.9
EL10Ac4g09793 Beta vulgaris HOM05D002498 ORTHO05D002553 2.6e-14 83.6 251 33.5
CSS0024290 Camellia sinensis var. sinensis HOM05D002498 ORTHO05D002553 3.4e-14 83.2 77 67.5
CSS0039181 Camellia sinensis var. sinensis HOM05D002498 ORTHO05D002553 3.4e-14 83.2 77 67.5
PSO339G1709 Papaver somniferum HOM05D002498 ORTHO05D002553 2.2e-13 80.5 149 45.0
Peaxi162Scf00038g01936 Petunia axillaris HOM05D002498 ORTHO05D002553 5.5e-12 75.9 83 57.8
SEGI_25834 Sequoiadendron giganteum HOM05D002498 ORTHO05D002553 7.1e-12 75.5 200 36.5
SalBow6G7196 Salvia bowleyana HOM05D002498 ORTHO05D002553 2.7e-11 73.6 86 54.7
Medtr8g020470 Medicago truncatula HOM05D002498 ORTHO05D002553 1.9e-09 67.4 136 44.9
Ah.06g188950 Amaranthus hybridus HOM05D002498 ORTHO05D002553 3.3e-09 66.6 249 33.3
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 3.7e-08 63.2 84 54.8
unitig_32.g11187 Utricularia gibba HOM05D002498 ORTHO05D002553 6.2e-08 62.4 67 55.2
SHI32207 Sapria himalayana HOM05D002498 ORTHO05D002553 8.1e-08 62.0 72 45.8
MBI14_g32128_MAGBIO Magnolia biondii HOM05D002498 ORTHO05D002553 1.4e-07 61.2 96 51.0
arahy.Tifrunner.gnm1.ann1.T5SCHP Arachis hypogaea HOM05D002498 ORTHO05D002553 1.2e-06 58.2 76 53.9
Hund07160 Selenicereus undatus HOM05D002498 ORTHO05D002553 1.5e-06 57.8 84 48.8
Rhsim12G0209700 Rhododendron simsii HOM05D002498 ORTHO05D002553 2.6e-06 57.0 48 64.6


User provided reference genes

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