Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.6e-62 241.9 125 100.0
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 9.4e-60 233.4 132 93.2
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 9.4e-60 233.4 132 93.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 2.7e-59 231.9 132 92.4
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 2.3e-58 228.8 133 93.2
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 2.3e-58 228.8 133 92.5
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.3e-58 228.8 133 93.2
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 2.3e-58 228.8 133 92.5
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.3e-58 228.8 132 91.7
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.0e-58 228.4 132 91.7
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 7.4e-57 223.8 133 91.0
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 7.4e-57 223.8 133 90.2
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.7e-56 222.6 132 89.4
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 8.2e-56 220.3 133 88.0
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 5.3e-55 217.6 133 88.0
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 4.5e-54 214.5 131 87.0
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.0e-53 213.4 132 86.4
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 6.5e-53 210.7 132 84.8
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.1e-52 209.9 132 84.8
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 7.2e-52 207.2 132 84.1
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.2e-51 206.5 132 83.3
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 2.7e-51 205.3 132 83.3
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 2.7e-51 205.3 132 83.3
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.6e-51 204.9 131 83.2
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 3.6e-51 204.9 132 83.3
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 3.6e-51 204.9 132 83.3
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.6e-51 204.9 132 83.3
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.6e-51 204.9 132 83.3
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.6e-51 204.9 132 83.3
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 3.6e-51 204.9 132 83.3
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.6e-51 204.9 132 83.3
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 4.7e-51 204.5 132 83.3
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 6.1e-51 204.1 132 82.6
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 8.0e-51 203.8 131 82.4
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 8.0e-51 203.8 131 84.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.0e-50 203.4 132 81.8
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 1.8e-50 202.6 132 83.3
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 3.0e-50 201.8 132 81.8
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 4.0e-50 201.4 132 82.6
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 5.2e-50 201.1 132 81.1
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 6.7e-50 200.7 132 81.1
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 6.7e-50 200.7 132 81.1
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 6.7e-50 200.7 132 81.1
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 6.7e-50 200.7 132 81.1
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 6.7e-50 200.7 132 81.1
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 8.8e-50 200.3 132 81.1
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 8.8e-50 200.3 132 81.8
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 8.8e-50 200.3 132 81.8
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 8.8e-50 200.3 132 81.8
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 8.8e-50 200.3 132 81.1
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 8.8e-50 200.3 132 81.8
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 8.8e-50 200.3 132 81.1
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.2e-49 199.9 132 81.1
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.2e-49 199.9 132 81.1
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.2e-49 199.9 132 81.1
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.2e-49 199.9 132 81.1
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.5e-49 199.5 132 80.3
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.5e-49 199.5 132 80.3
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.5e-49 199.5 132 81.1
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.5e-49 199.5 132 81.1
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.5e-49 199.5 132 80.3
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.5e-49 199.5 132 80.3
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 2.0e-49 199.1 131 80.2
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.0e-49 199.1 132 81.1
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 2.0e-49 199.1 132 81.1
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 2.0e-49 199.1 132 80.3
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.6e-49 198.7 132 81.1
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.6e-49 198.7 132 81.1
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.3e-49 198.4 129 81.4
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.3e-49 198.4 129 80.6
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 4.4e-49 198.0 132 81.1
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.7e-49 197.6 132 80.3
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 7.5e-49 197.2 132 81.1
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 9.7e-49 196.8 132 78.8
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 9.7e-49 196.8 132 80.3
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 9.7e-49 196.8 133 80.5
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.3e-48 196.4 130 80.8
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.3e-48 196.4 132 80.3
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.7e-48 196.1 131 79.4
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.2e-48 195.7 131 80.2
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 2.8e-48 195.3 132 78.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 2.8e-48 195.3 133 79.7
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.8e-48 195.3 132 78.8
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 3.7e-48 194.9 138 76.1
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.7e-48 194.9 131 79.4
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 3.7e-48 194.9 130 80.0
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 8.2e-48 193.7 132 78.0
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 8.2e-48 193.7 157 70.1
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-47 193.0 132 78.8
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.4e-47 193.0 130 78.5
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.4e-47 193.0 132 79.5
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.8e-47 192.6 132 78.0
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.1e-47 191.8 131 78.6
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 4.1e-47 191.4 132 77.3
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 4.1e-47 191.4 132 78.0
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 4.1e-47 191.4 131 76.3
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 5.3e-47 191.0 131 76.3
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 7.0e-47 190.7 132 77.3
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.6e-46 189.5 131 75.6
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.0e-46 189.1 131 75.6
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 2.0e-46 189.1 132 75.0
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 2.7e-46 188.7 131 77.1
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 3.5e-46 188.3 131 77.1
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 5.9e-46 187.6 131 74.8
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.7e-45 186.0 130 75.4
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.5e-45 184.1 131 74.0
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 8.5e-45 183.7 131 75.6
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.2e-43 179.9 137 73.0
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.6e-43 179.5 100 93.0
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.7e-43 177.9 131 71.8
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.0e-42 176.8 131 71.0
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 3.4e-41 171.8 128 68.8
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.7e-40 169.5 102 90.2
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.7e-40 168.3 131 71.0
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 6.5e-37 157.5 132 67.4
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.6e-35 151.8 133 61.7
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.4e-34 149.8 99 81.8
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 1.8e-34 149.4 111 73.9
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 8.9e-34 147.1 129 61.2
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-33 146.7 116 69.8
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.2e-33 146.7 107 75.7
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.2e-33 146.7 107 75.7
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.8e-33 143.7 100 78.0
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.4e-31 139.8 98 77.6
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 4.1e-31 138.3 99 74.7
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.2e-30 136.7 128 62.5
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 7.8e-30 134.0 132 61.4
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 7.8e-30 134.0 132 61.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.3e-29 133.3 132 60.6
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 5.6e-28 127.9 68 97.1
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 4.9e-24 114.8 131 52.7
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 8.3e-24 114.0 83 74.7
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.6e-22 109.8 72 79.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 6.0e-22 107.8 83 67.5
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 6.0e-22 107.8 58 93.1
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 3.9e-21 105.1 103 57.3
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.9e-20 102.8 83 68.7
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 5.6e-20 101.3 72 73.6
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 2.1e-19 99.4 56 89.3
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 6.8e-18 94.4 72 69.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.2e-17 93.6 120 48.3
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 2.6e-17 92.4 123 46.3
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 9.8e-17 90.5 161 40.4
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.5e-14 82.0 63 71.4
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 3.0e-13 79.0 167 34.7
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 1.5e-09 66.6 148 35.8


User provided reference genes

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