Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06697 Brassica carinata HOM05D000183 ORTHO05D000100 2.0e-86 322.4 161 100.0
C07p61930 Brassica napus HOM05D000183 ORTHO05D000100 1.3e-34 150.2 82 92.7
BolC7t46614H Brassica oleracea HOM05D000183 ORTHO05D000100 1.3e-34 150.2 82 92.7
A01p02170 Brassica napus HOM05D000183 ORTHO05D000100 2.3e-34 149.4 82 89.0
BraA01t00206Z Brassica rapa HOM05D000183 ORTHO05D000100 2.3e-34 149.4 82 89.0
BcaNung04436 Brassica carinata HOM05D000183 ORTHO05D000100 3.9e-34 148.7 82 89.0
Sp7g34400 Schrenkiella parvula HOM05D000183 ORTHO05D000100 3.9e-34 148.7 82 90.2
BcaNung00704 Brassica carinata HOM05D000183 ORTHO05D000100 1.5e-33 146.7 82 89.0
C01p02360 Brassica napus HOM05D000183 ORTHO05D000100 4.3e-33 145.2 82 87.8
BolC1t00227H Brassica oleracea HOM05D000183 ORTHO05D000100 4.3e-33 145.2 82 87.8
A03p64560 Brassica napus HOM05D000183 ORTHO05D000100 7.4e-33 144.4 82 91.5
BraA03t15522Z Brassica rapa HOM05D000183 ORTHO05D000100 7.4e-33 144.4 82 91.5
AT4G36740 Arabidopsis thaliana HOM05D000183 ORTHO05D000100 9.7e-33 144.1 82 87.8
Thhalv10026207m.g Eutrema salsugineum HOM05D000183 ORTHO05D000100 2.2e-32 142.9 81 88.9
AL7G14260 Arabidopsis lyrata HOM05D000183 ORTHO05D000100 2.8e-32 142.5 82 86.6
CARHR245090 Cardamine hirsuta HOM05D000183 ORTHO05D000100 3.7e-32 142.1 83 86.7
Carub.0007s0358 Capsella rubella HOM05D000183 ORTHO05D000100 3.4e-30 135.6 83 80.7
BcaC01g00444 Brassica carinata HOM05D000183 ORTHO05D000100 2.7e-27 125.9 76 81.6
C03p79910 Brassica napus HOM05D000183 ORTHO05D000100 2.7e-27 125.9 76 81.6
BcaB03g12372 Brassica carinata HOM05D000183 ORTHO05D000100 2.3e-26 122.9 94 71.3
A08p22390 Brassica napus HOM05D000183 ORTHO05D000100 2.3e-26 122.9 76 77.6
BraA08t34196Z Brassica rapa HOM05D000183 ORTHO05D000100 2.3e-26 122.9 76 77.6
BolC3t20244H Brassica oleracea HOM05D000183 ORTHO05D000100 3.0e-26 122.5 76 80.3
Aa31LG6G13550 Aethionema arabicum HOM05D000183 ORTHO05D000100 1.1e-25 120.6 86 77.9
Sp3g32030 Schrenkiella parvula HOM05D000183 ORTHO05D000100 2.6e-22 109.4 83 72.3
Aa31LG8G15480 Aethionema arabicum HOM05D000183 ORTHO05D000100 2.2e-21 106.3 108 62.0
CARHR109160 Cardamine hirsuta HOM05D000183 ORTHO05D000100 2.2e-21 106.3 104 62.5
Thhalv10022814m.g Eutrema salsugineum HOM05D000183 ORTHO05D000100 8.5e-21 104.4 83 68.7
BcaC06g36428 Brassica carinata HOM05D000183 ORTHO05D000100 1.1e-20 104.0 79 72.2
BolC7t40821H Brassica oleracea HOM05D000183 ORTHO05D000100 1.1e-20 104.0 79 72.2
A07p02140 Brassica napus HOM05D000183 ORTHO05D000100 2.5e-20 102.8 79 70.9
BraA07t28007Z Brassica rapa HOM05D000183 ORTHO05D000100 2.5e-20 102.8 79 70.9
BcaC04g22897 Brassica carinata HOM05D000183 ORTHO05D000100 1.2e-19 100.5 85 70.6
C07p04270 Brassica napus HOM05D000183 ORTHO05D000100 1.2e-19 100.5 79 70.9
C09p14110 Brassica napus HOM05D000183 ORTHO05D000100 1.2e-19 100.5 85 70.6
BolC9t54306H Brassica oleracea HOM05D000183 ORTHO05D000100 2.7e-19 99.4 85 69.4
BraA09t36842Z Brassica rapa HOM05D000183 ORTHO05D000100 1.0e-18 97.4 85 70.6
BcaB07g31655 Brassica carinata HOM05D000183 ORTHO05D000100 1.8e-18 96.7 85 67.1
A09p11970 Brassica napus HOM05D000183 ORTHO05D000100 2.3e-18 96.3 85 69.4
THA.LOC104819802 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 1.1e-17 94.0 103 53.4
Carub.0003s3279 Capsella rubella HOM05D000183 ORTHO05D000100 2.0e-17 93.2 83 66.3
THA.LOC104804227 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 2.6e-17 92.8 82 62.2
AL3G51890 Arabidopsis lyrata HOM05D000183 ORTHO05D000100 4.4e-17 92.0 83 62.7
AT2G18550 Arabidopsis thaliana HOM05D000183 ORTHO05D000100 5.7e-17 91.7 83 61.4
BolC3t14104H Brassica oleracea HOM05D003452 ORTHO05D004046 1.4e-12 77.0 109 47.7
C03p16820 Brassica napus HOM05D003452 ORTHO05D004046 3.2e-12 75.9 109 47.7
Peaxi162Scf00008g00428 Petunia axillaris HOM05D000183 ORTHO05D000100 3.2e-12 75.9 91 52.7
RcHm_v2.0_Chr2g0102221 Rosa chinensis HOM05D000183 ORTHO05D000100 3.2e-12 75.9 105 44.8
Duzib147G1427 Durio zibethinus HOM05D000183 ORTHO05D000100 4.2e-12 75.5 82 51.2
Gohir.D11G047600 Gossypium hirsutum HOM05D000183 ORTHO05D000100 4.2e-12 75.5 84 51.2
Gorai.007G051100 Gossypium raimondii HOM05D000183 ORTHO05D000100 4.2e-12 75.5 84 51.2
MD15G1266900 Malus domestica HOM05D000183 ORTHO05D000100 4.2e-12 75.5 82 47.6
Duzib187G0126 Durio zibethinus HOM05D000183 ORTHO05D000100 5.5e-12 75.1 103 48.5
MD02G1152500 Malus domestica HOM05D000183 ORTHO05D000100 5.5e-12 75.1 96 44.8
Cc07_g09150 Coffea canephora HOM05D000183 ORTHO05D000100 9.4e-12 74.3 98 44.9
GSVIVG01019012001 Vitis vinifera HOM05D000183 ORTHO05D000100 9.4e-12 74.3 101 45.5
Glyma.11G064800 Glycine max HOM05D000183 ORTHO05D000100 4.7e-11 72.0 83 51.8
Gohir.A11G044100 Gossypium hirsutum HOM05D000183 ORTHO05D000100 4.7e-11 72.0 84 50.0
THA.LOC104807548 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 6.1e-11 71.6 104 48.1
Thecc.01G040100 Theobroma cacao HOM05D000183 ORTHO05D000100 6.1e-11 71.6 80 55.0
FAN26G2213 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.0e-10 70.9 84 47.6
Glyma.01G177500 Glycine max HOM05D000183 ORTHO05D000100 1.0e-10 70.9 83 51.8
Lj2C448T4 Lonicera japonica HOM05D000183 ORTHO05D000100 1.0e-10 70.9 87 49.4
FvH4_1g13930 Fragaria vesca HOM05D000183 ORTHO05D000100 1.4e-10 70.5 106 42.5
FAN28G0304 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.4e-10 70.5 85 47.1
FAN28G0314 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.4e-10 70.5 85 47.1
Nitab4.5_0003410g0080 Nicotiana tabacum HOM05D000183 ORTHO05D000100 1.8e-10 70.1 94 50.0
FAN23G1131 Fragaria x ananassa HOM05D000183 ORTHO05D000100 2.3e-10 69.7 105 43.8
Dinv26804 Davidia involucrata HOM05D000183 ORTHO05D000100 3.0e-10 69.3 82 51.2
Duzib264G0267 Durio zibethinus HOM05D000183 ORTHO05D000100 5.2e-10 68.6 103 46.6
Gohir.D03G016400 Gossypium hirsutum HOM05D000183 ORTHO05D000100 5.2e-10 68.6 105 46.7
Sabra07G0025400 Salix brachista HOM05D000183 ORTHO05D000100 5.2e-10 68.6 82 47.6
Manes.12G089788 Manihot esculenta HOM05D000183 ORTHO05D000100 6.7e-10 68.2 82 48.8
Potri.005G126100 Populus trichocarpa HOM05D000183 ORTHO05D000100 8.8e-10 67.8 103 44.7
BcaB01g04320 Brassica carinata HOM05D003452 ORTHO05D004046 1.5e-09 67.0 110 43.6
CANSAT01G1779 Cannabis sativa HOM05D000183 ORTHO05D000100 1.5e-09 67.0 106 48.1
FAN19G1985 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.5e-09 67.0 106 41.5
Gorai.003G016600 Gossypium raimondii HOM05D000183 ORTHO05D000100 1.5e-09 67.0 105 45.7
Nitab4.5_0000628g0070 Nicotiana tabacum HOM05D000183 ORTHO05D000100 1.5e-09 67.0 96 46.9
Potri.007G029500 Populus trichocarpa HOM05D000183 ORTHO05D000100 2.0e-09 66.6 100 45.0
Peaxi162Scf00427g00048 Petunia axillaris HOM05D000183 ORTHO05D000100 2.6e-09 66.2 83 47.0
TWI09G0529 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 2.6e-09 66.2 82 46.3
Actinidia12108 Actinidia chinensis HOM05D000183 ORTHO05D000100 9.7e-09 64.3 83 48.2
Sabra05G0103700 Salix brachista HOM05D000183 ORTHO05D000100 9.7e-09 64.3 82 47.6
ECA246G1049 Erigeron canadensis HOM05D000183 ORTHO05D000100 1.3e-08 63.9 79 48.1
Lalb_Chr16g0377911 Lupinus albus HOM05D000183 ORTHO05D000100 1.3e-08 63.9 85 51.8
CSS0000333 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 1.7e-08 63.5 79 45.6
Nitab4.5_0001279g0130 Nicotiana tabacum HOM05D000183 ORTHO05D000100 1.7e-08 63.5 85 47.1
Nitab4.5_0002753g0010 Nicotiana tabacum HOM05D000183 ORTHO05D000100 1.7e-08 63.5 85 48.2
TWI73G0592 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 1.7e-08 63.5 76 50.0
Solyc02g085630.3 Solanum lycopersicum HOM05D000183 ORTHO05D000100 2.8e-08 62.8 103 43.7
Sopen02g030300 Solanum pennellii HOM05D000183 ORTHO05D000100 2.8e-08 62.8 103 43.7
C07p61910 Brassica napus HOM05D003452 ORTHO05D004046 3.7e-08 62.4 29 96.6
BolC7t46612H Brassica oleracea HOM05D003452 ORTHO05D004046 3.7e-08 62.4 29 96.6
Glyma.02G058900 Glycine max HOM05D000183 ORTHO05D000100 3.7e-08 62.4 103 39.8
Gohir.D11G192900 Gossypium hirsutum HOM05D000183 ORTHO05D000100 4.8e-08 62.0 103 38.8
Oeu039052.1 Olea europaea HOM05D000183 ORTHO05D000100 4.8e-08 62.0 90 44.4
CSS0032731 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 8.2e-08 61.2 78 50.0
Lalb_Chr09g0322621 Lupinus albus HOM05D000183 ORTHO05D000100 8.2e-08 61.2 85 50.6
Gorai.007G206000 Gossypium raimondii HOM05D000183 ORTHO05D000100 1.8e-07 60.1 103 37.9
CAN.G358.127 Capsicum annuum HOM05D000183 ORTHO05D000100 2.4e-07 59.7 103 41.7
HanXRQChr11g0338861 Helianthus annuus HOM05D000183 ORTHO05D000100 2.4e-07 59.7 79 46.8
Prupe.7G149700 Prunus persica HOM05D000183 ORTHO05D000100 2.4e-07 59.7 66 45.5
Rhsim08G0112600 Rhododendron simsii HOM05D000183 ORTHO05D000100 2.4e-07 59.7 86 47.7
Gohir.A11G186400 Gossypium hirsutum HOM05D000183 ORTHO05D000100 3.1e-07 59.3 103 37.9
Manes.13G136800 Manihot esculenta HOM05D000183 ORTHO05D000100 3.1e-07 59.3 82 45.1
PGSC0003DMG400012682 Solanum tuberosum HOM05D000183 ORTHO05D000100 3.1e-07 59.3 103 41.7
Oeu014923.1 Olea europaea HOM05D000183 ORTHO05D000100 4.1e-07 58.9 97 40.2
Sed0024611 Sechium edule HOM05D000183 ORTHO05D000100 4.1e-07 58.9 83 44.6
FAN21G1791 Fragaria x ananassa HOM05D000183 ORTHO05D000100 5.3e-07 58.5 77 44.2
Cfa019335 Carpinus fangiana HOM05D000183 ORTHO05D000100 7.0e-07 58.2 82 45.1
FAN16G0844 Fragaria x ananassa HOM05D000183 ORTHO05D000100 7.0e-07 58.2 77 44.2
Lalb_Chr05g0212961 Lupinus albus HOM05D000183 ORTHO05D000100 7.0e-07 58.2 85 48.2
MSTRG.2750 Avicennia marina HOM05D000183 ORTHO05D000100 9.1e-07 57.8 81 46.9
BcaC01g06323 Brassica carinata HOM05D003452 ORTHO05D004046 1.2e-06 57.4 58 55.2
Haze_07726 Corylus avellana HOM05D000183 ORTHO05D000100 1.2e-06 57.4 82 45.1
PGR102G1564 Punica granatum HOM05D000183 ORTHO05D000100 1.6e-06 57.0 87 47.1
Gohir.A02G163800 Gossypium hirsutum HOM05D000183 ORTHO05D000100 2.0e-06 56.6 105 41.0
vmacro17862 Vaccinium macrocarpon HOM05D000183 ORTHO05D000100 2.0e-06 56.6 83 47.0
Actinidia36542 Actinidia chinensis HOM05D000183 ORTHO05D000100 2.6e-06 56.2 84 44.0
Cpa.g.c43262 Carica papaya HOM05D000183 ORTHO05D000100 3.5e-06 55.8 107 43.0
VMungo0251G2824 Vigna mungo HOM05D000183 ORTHO05D000100 5.9e-06 55.1 82 42.7


User provided reference genes

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