Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 1.6e-86 322.8 166 100.0
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 1.6e-86 322.8 166 100.0
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 6.0e-54 214.5 220 58.6
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.0e-53 213.8 220 58.6
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 1.0e-53 213.8 220 58.6
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 2.3e-53 212.6 220 58.2
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 2.3e-53 212.6 220 58.2
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 3.0e-53 212.2 220 58.2
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 1.1e-52 210.3 191 64.4
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 1.1e-52 210.3 220 57.7
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 4.3e-52 208.4 191 63.4
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 4.8e-51 204.9 185 64.3
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.5e-49 199.9 188 61.2
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 2.2e-48 196.1 191 59.7
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 6.4e-48 194.5 191 59.7
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 6.4e-48 194.5 191 59.7
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 2.4e-47 192.6 153 68.6
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 5.4e-47 191.4 188 62.2
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 6.0e-46 188.0 188 55.9
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 1.3e-45 186.8 191 55.5
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.9e-45 185.3 191 55.0
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 6.6e-45 184.5 188 54.8
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.1e-44 183.7 191 56.0
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 2.5e-44 182.6 188 60.1
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.3e-43 180.3 191 53.9
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 2.1e-43 179.5 189 53.4
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.6e-43 178.7 165 57.6
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 4.8e-43 178.3 160 59.4
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 4.8e-43 178.3 188 52.7
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 6.2e-43 177.9 191 53.9
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 8.1e-43 177.6 191 53.9
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 8.1e-43 177.6 191 54.5
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 8.1e-43 177.6 191 54.5
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 5.3e-42 174.9 188 52.7
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 5.3e-42 174.9 191 54.5
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 5.3e-42 174.9 191 53.9
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.2e-41 173.7 189 54.0
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.2e-41 173.7 189 54.0
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.2e-41 173.7 188 53.2
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 2.0e-41 172.9 188 52.7
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 3.4e-41 172.2 188 52.1
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 4.5e-41 171.8 186 51.6
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 4.5e-41 171.8 188 51.1
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 5.8e-41 171.4 188 51.1
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 7.6e-41 171.0 196 53.6
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 1.3e-40 170.2 188 51.6
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 1.7e-40 169.9 188 53.2
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 2.2e-40 169.5 188 51.6
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 2.2e-40 169.5 188 51.6
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.2e-40 169.5 188 50.5
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 2.9e-40 169.1 153 60.8
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.8e-40 168.7 188 51.1
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.8e-40 168.7 188 51.1
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 4.9e-40 168.3 188 50.5
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 4.9e-40 168.3 188 50.0
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 6.4e-40 167.9 188 51.6
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 6.4e-40 167.9 189 51.9
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 8.4e-40 167.5 149 60.4
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.1e-39 167.2 188 52.7
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 1.1e-39 167.2 153 60.1
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 1.1e-39 167.2 188 51.1
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.1e-39 167.2 188 51.1
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.4e-39 166.8 188 50.5
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.4e-39 166.8 188 51.1
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.4e-39 166.8 188 50.5
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.4e-39 166.8 188 50.5
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.4e-39 166.8 188 50.5
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.9e-39 166.4 188 50.5
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.9e-39 166.4 153 59.5
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.9e-39 166.4 153 59.5
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.9e-39 166.4 153 59.5
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 1.9e-39 166.4 153 58.8
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 1.9e-39 166.4 153 58.8
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.9e-39 166.4 187 49.7
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 2.4e-39 166.0 187 51.3
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 2.4e-39 166.0 184 53.3
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 2.4e-39 166.0 191 49.7
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 3.2e-39 165.6 191 49.7
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.2e-39 165.6 153 59.5
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.2e-39 165.6 153 59.5
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 5.4e-39 164.9 153 58.2
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 5.4e-39 164.9 188 50.5
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 7.1e-39 164.5 103 77.7
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 7.1e-39 164.5 190 50.5
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 7.1e-39 164.5 188 51.1
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 9.3e-39 164.1 188 48.4
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 1.2e-38 163.7 153 56.9
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.1e-38 162.9 153 56.2
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 2.1e-38 162.9 188 51.6
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 4.6e-38 161.8 188 50.0
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 6.0e-38 161.4 191 50.3
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 6.0e-38 161.4 187 49.7
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 7.9e-38 161.0 188 48.9
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 7.9e-38 161.0 188 49.5
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 7.9e-38 161.0 188 51.6
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 7.9e-38 161.0 153 57.5
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 1.0e-37 160.6 153 57.5
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 1.3e-37 160.2 188 47.9
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 1.8e-37 159.8 188 48.9
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 1.8e-37 159.8 188 49.5
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 2.3e-37 159.5 153 56.2
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 2.3e-37 159.5 188 48.9
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 2.3e-37 159.5 209 48.8
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 3.0e-37 159.1 188 49.5
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 3.0e-37 159.1 103 77.7
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 3.9e-37 158.7 215 45.6
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 5.1e-37 158.3 172 52.9
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 8.7e-37 157.5 191 49.2
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 1.2e-33 147.1 129 61.2
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 7.6e-33 144.4 103 68.0
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 1.0e-32 144.1 165 55.8
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 2.9e-32 142.5 188 44.1
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 4.9e-32 141.7 188 44.1
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 6.5e-32 141.4 189 45.5
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 6.5e-32 141.4 189 45.5
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 2.7e-30 136.0 183 41.5
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 5.1e-29 131.7 191 40.8
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 1.1e-28 130.6 104 60.6
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 1.6e-27 126.7 204 42.6
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 6.2e-27 124.8 144 48.6
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 5.3e-26 121.7 188 43.1
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.2e-25 120.6 102 59.8
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 2.9e-24 115.9 188 43.6
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.3e-21 107.1 67 74.6
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 8.7e-21 104.4 105 53.3
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 5.5e-15 85.1 102 43.1
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 1.6e-14 83.6 153 36.6
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 4.6e-14 82.0 130 39.2
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 8.2e-11 71.2 153 34.0
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 2.2e-08 63.2 119 39.5
Medtr0130s0060 Medicago truncatula HOM05D003167 ORTHO05D003929 2.1e-06 56.6 37 75.7


User provided reference genes

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