Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 5.3e-96 354.4 183 100.0
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 2.3e-91 339.0 175 100.0
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 1.8e-88 329.3 175 96.0
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 2.4e-88 328.9 177 97.2
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 2.4e-88 328.9 175 96.0
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 1.1e-77 293.5 170 88.2
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.9e-77 292.7 173 90.8
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 1.9e-77 292.7 170 88.8
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 6.1e-76 287.7 170 85.9
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 5.0e-70 268.1 170 84.1
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 7.5e-66 254.2 170 73.5
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 2.3e-59 232.6 177 67.2
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 2.0e-58 229.6 174 66.1
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 3.4e-58 228.8 170 67.1
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 7.5e-58 227.6 173 65.9
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 9.9e-58 227.3 173 66.5
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.9e-57 225.7 164 68.9
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 8.3e-57 224.2 170 67.1
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 1.1e-56 223.8 162 69.8
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 1.9e-56 223.0 168 65.5
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 2.4e-56 222.6 172 64.5
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.4e-56 222.6 181 59.1
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 4.1e-56 221.9 168 64.3
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 5.4e-56 221.5 168 64.3
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 5.4e-56 221.5 179 63.7
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 1.2e-55 220.3 157 69.4
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.2e-55 220.3 168 67.3
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 1.2e-55 220.3 176 62.5
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.6e-55 219.9 168 66.7
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 2.7e-55 219.2 158 68.4
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 4.6e-55 218.4 168 64.9
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 4.6e-55 218.4 168 64.9
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 4.6e-55 218.4 168 64.9
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 4.6e-55 218.4 172 65.1
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 4.6e-55 218.4 163 66.3
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 6.0e-55 218.0 169 66.3
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 7.8e-55 217.6 171 63.7
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 7.8e-55 217.6 168 63.7
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.3e-54 216.9 167 63.5
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 1.3e-54 216.9 167 63.5
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 1.3e-54 216.9 159 66.7
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 1.3e-54 216.9 172 64.5
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 1.3e-54 216.9 161 68.3
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 1.3e-54 216.9 166 63.3
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 1.3e-54 216.9 160 68.1
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 1.7e-54 216.5 164 67.7
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 1.7e-54 216.5 164 67.7
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 1.7e-54 216.5 159 67.9
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 1.7e-54 216.5 172 64.5
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 1.7e-54 216.5 170 65.9
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.3e-54 216.1 172 64.0
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 2.3e-54 216.1 160 68.1
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 3.0e-54 215.7 171 63.2
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 3.9e-54 215.3 166 66.3
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 3.9e-54 215.3 169 62.7
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 5.1e-54 214.9 172 64.5
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 1.1e-53 213.8 174 60.9
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 1.5e-53 213.4 177 62.1
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 1.5e-53 213.4 160 61.9
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 4.3e-53 211.8 168 62.5
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 4.3e-53 211.8 158 67.7
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 4.3e-53 211.8 158 67.1
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 9.5e-53 210.7 165 63.0
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 1.6e-52 209.9 158 68.4
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 2.1e-52 209.5 171 62.6
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 2.8e-52 209.1 167 63.5
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 4.7e-52 208.4 161 64.0
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 8.1e-52 207.6 173 59.5
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 2.4e-51 206.1 164 61.6
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 2.4e-51 206.1 161 61.5
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 6.8e-51 204.5 178 59.0
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 6.8e-51 204.5 168 59.5
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 1.2e-50 203.8 162 65.4
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 1.5e-50 203.4 159 64.2
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 2.0e-50 203.0 167 59.9
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 2.6e-50 202.6 165 62.4
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 2.6e-50 202.6 167 60.5
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 3.4e-50 202.2 160 62.5
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 3.4e-50 202.2 167 59.9
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 9.9e-50 200.7 165 62.4
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 1.7e-49 199.9 157 63.7
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.2e-49 199.5 164 63.4
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.9e-49 199.1 163 60.1
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 3.8e-49 198.7 157 61.1
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 1.1e-48 197.2 165 60.0
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 3.2e-48 195.7 162 58.6
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 5.4e-48 194.9 162 59.3
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 1.7e-46 189.9 158 61.4
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.1e-45 187.2 163 59.5
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 2.8e-44 182.6 169 58.6
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 4.0e-43 178.7 108 88.0
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 3.8e-41 172.2 155 54.2
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 3.2e-40 169.1 90 91.1
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 7.1e-40 167.9 158 57.6
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 2.1e-39 166.4 171 52.6
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 5.1e-38 161.8 170 49.4
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 7.3e-37 157.9 117 70.9
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 1.6e-36 156.8 169 47.9
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 3.6e-36 155.6 121 64.5
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.8e-35 153.3 127 62.2
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 4.0e-35 152.1 118 66.9
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 8.4e-33 144.4 171 49.7
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 5.4e-32 141.7 116 62.1
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 7.4e-29 131.3 93 64.5
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.4e-27 127.1 168 45.8
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.8e-25 119.0 168 44.6
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.9e-24 116.7 87 63.2
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.3e-22 110.5 123 48.0
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 7.4e-21 104.8 93 57.0
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 3.7e-20 102.4 150 40.0
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 3.0e-14 82.8 91 45.1
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 3.8e-09 65.9 49 55.1
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 6.1e-07 58.5 63 41.3
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 7.9e-07 58.2 58 46.6
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.9e-07 58.2 48 52.1
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.9e-07 58.2 48 52.1
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 1.8e-06 57.0 68 41.2
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.8e-06 54.7 63 41.3


User provided reference genes

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