Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.4e-251 872.5 448 100.0
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 8.1e-247 856.7 450 98.7
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 1.1e-243 846.3 450 97.6
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 5.8e-237 823.9 450 95.3
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.9e-235 818.9 451 95.1
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 2.6e-205 718.8 454 85.7
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.0e-201 706.8 451 84.3
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 3.9e-201 704.9 451 83.6
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 4.2e-195 684.9 473 78.9
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 4.7e-194 681.4 451 82.0
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 6.1e-178 627.9 496 72.4
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 3.4e-160 568.9 460 71.1
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 2.6e-144 516.2 456 63.4
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 3.8e-143 512.3 481 61.7
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 3.0e-140 502.7 454 62.1
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 5.6e-139 498.4 456 62.3
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.1e-138 496.5 454 61.5
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 3.6e-138 495.7 456 61.8
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 4.0e-137 492.3 494 56.9
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 1.5e-136 490.3 458 62.2
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 2.6e-136 489.6 457 60.6
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 2.6e-136 489.6 460 60.2
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 5.8e-136 488.4 454 61.7
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 7.6e-136 488.0 457 61.7
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 7.6e-136 488.0 460 60.0
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 9.9e-136 487.6 454 60.8
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 2.2e-135 486.5 455 61.8
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.9e-135 486.1 456 61.6
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.9e-135 486.1 458 61.4
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 3.8e-135 485.7 456 61.0
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 6.4e-135 485.0 454 60.6
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.9e-134 483.4 459 59.9
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 2.4e-134 483.0 459 60.6
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 3.2e-134 482.6 454 59.7
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 3.5e-133 479.2 459 62.1
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 4.6e-133 478.8 456 60.3
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.0e-132 477.6 455 60.2
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.7e-132 476.9 458 59.4
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 6.6e-132 474.9 455 58.9
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.5e-131 473.0 455 60.4
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.3e-131 472.6 455 59.8
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 1.3e-130 470.7 451 59.9
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.3e-130 470.7 451 59.9
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-130 469.9 451 59.6
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 3.6e-130 469.2 455 58.5
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 6.2e-130 468.4 451 59.6
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 6.2e-130 468.4 455 58.9
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 8.1e-130 468.0 447 59.3
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.8e-129 466.8 456 59.6
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 9.0e-129 464.5 461 58.6
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.2e-128 464.2 451 59.6
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 7.6e-128 461.5 456 58.8
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 7.6e-128 461.5 456 59.0
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 1.3e-127 460.7 456 58.8
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 2.2e-127 459.9 455 58.9
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 2.2e-127 459.9 459 58.8
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 3.8e-127 459.1 456 59.0
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.8e-127 459.1 457 58.0
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 4.9e-127 458.8 447 59.1
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.1e-126 457.6 448 58.7
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.4e-126 457.2 449 59.2
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 3.2e-126 456.1 448 58.9
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.3e-126 454.5 440 59.8
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 1.2e-125 454.1 456 58.3
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 2.7e-125 453.0 459 59.7
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 3.5e-125 452.6 451 58.3
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.5e-125 452.6 449 58.1
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 6.0e-125 451.8 445 58.9
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 7.9e-125 451.4 474 57.8
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.0e-124 451.1 459 58.4
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.8e-124 450.3 449 58.6
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 3.9e-124 449.1 449 59.7
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.1e-123 447.6 449 58.6
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 2.5e-123 446.4 459 59.0
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 9.6e-123 444.5 457 58.2
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 2.1e-122 443.4 497 52.9
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.1e-121 441.0 455 57.4
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.1e-121 441.0 460 56.1
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 3.1e-121 439.5 449 56.6
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.3e-121 438.7 455 56.5
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.3e-121 438.7 455 56.5
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 6.9e-121 438.3 454 58.6
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 2.0e-120 436.8 455 57.1
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 4.5e-120 435.6 462 57.1
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.7e-119 433.7 458 56.8
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 1.7e-119 433.7 457 56.7
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 6.4e-119 431.8 438 57.5
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 4.2e-118 429.1 457 54.9
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 9.3e-118 427.9 460 56.1
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.3e-116 424.1 448 56.5
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.3e-116 424.1 457 55.1
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 8.7e-116 421.4 460 54.6
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 1.1e-113 414.5 460 53.9
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 1.4e-113 414.1 461 54.9
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.4e-113 413.3 447 54.4
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 6.5e-111 405.2 441 55.6
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 5.5e-110 402.1 452 54.0
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 5.5e-110 402.1 446 53.8
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 2.1e-109 400.2 473 51.8
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.8e-108 397.1 447 54.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.8e-106 389.8 448 51.3
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 3.7e-106 389.4 446 52.9
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.1e-105 387.9 451 53.0
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 1.5e-104 384.0 448 51.8
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.0e-104 383.6 448 51.8
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.9e-102 377.1 383 56.7
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.4e-100 370.9 447 52.8
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 6.7e-100 368.6 476 50.4
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 1.5e-99 367.5 389 57.8
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.0e-99 367.1 462 51.1
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 5.7e-99 365.5 301 65.8
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 1.4e-97 360.9 450 50.0
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 3.2e-94 349.7 455 47.0
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.1e-91 341.3 451 48.1
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 4.1e-89 332.8 446 47.8
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 7.7e-88 328.6 476 46.4
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.6e-85 320.9 389 50.9
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.7e-85 319.3 169 94.1
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 8.0e-85 318.5 441 47.6
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.1e-83 314.7 311 56.9
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.2e-77 294.7 386 50.3
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 5.7e-75 285.8 385 48.8
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.6e-72 277.7 326 54.3
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 2.7e-69 266.9 319 52.0
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 8.0e-61 238.8 453 39.7
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 8.9e-60 235.3 453 39.5
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 4.1e-57 226.5 257 50.6
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 4.1e-57 226.5 257 50.6
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 4.5e-56 223.0 220 61.8
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 6.1e-53 212.6 365 42.7
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 6.8e-52 209.1 145 72.4
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.7e-48 197.2 322 42.2
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 1.1e-46 191.8 112 86.6
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.3e-44 184.1 135 79.3
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 7.5e-43 179.1 140 70.0
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.7e-42 177.9 137 70.8
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.5e-38 164.1 122 73.8
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.6e-38 162.9 334 39.2
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 2.8e-37 160.6 94 86.2
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.6e-37 160.2 206 46.1
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.4e-36 158.3 132 59.8
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 2.5e-30 137.5 74 85.1
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.8e-29 134.0 99 69.7
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.4e-28 131.0 91 72.5
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.2e-27 128.6 69 85.5
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.8e-26 123.6 257 38.1
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 3.2e-25 120.6 68 79.4
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 8.1e-21 105.9 521 27.6
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.5e-19 101.7 178 40.4
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 4.0e-12 77.0 54 68.5
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 2.4e-09 67.8 67 53.7
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 1.2e-08 65.5 92 47.8


User provided reference genes

Program Settings