Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.6e-249 865.9 536 100.0
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 3.8e-219 765.0 539 88.5
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 1.1e-218 763.5 531 91.1
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 3.6e-217 758.4 531 90.4
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 4.7e-217 758.1 532 88.9
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 2.3e-211 739.2 536 86.6
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 7.5e-207 724.2 534 85.2
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 4.3e-202 708.4 533 82.6
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 4.0e-200 701.8 537 84.4
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 1.0e-195 687.2 533 81.2
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 1.0e-187 660.6 531 79.5
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 3.6e-185 652.1 530 79.1
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 8.1e-185 651.0 526 83.1
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 6.4e-182 641.3 527 80.3
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 2.1e-180 636.3 530 75.7
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 2.2e-174 616.3 462 82.9
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 9.6e-170 600.9 542 72.3
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.4e-144 517.3 517 69.2
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.9e-141 506.9 555 60.7
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 2.1e-140 503.4 541 59.1
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.4e-139 500.7 557 63.0
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 5.1e-139 498.8 554 59.7
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.6e-138 496.5 544 61.2
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 2.2e-137 493.4 552 59.6
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.8e-136 490.3 550 58.2
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 3.1e-136 489.6 542 62.7
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 5.3e-136 488.8 540 62.4
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 6.9e-136 488.4 533 60.2
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 1.2e-135 487.6 547 53.0
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 2.0e-135 486.9 555 58.2
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 3.4e-135 486.1 531 59.3
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 1.0e-134 484.6 550 60.5
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 2.9e-134 483.0 552 60.3
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 3.8e-134 482.6 544 60.3
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 1.4e-133 480.7 523 62.0
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-132 477.2 550 62.9
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 4.7e-132 475.7 525 60.0
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 6.1e-132 475.3 570 57.7
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.4e-131 474.2 544 63.8
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 2.3e-131 473.4 538 61.5
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 3.9e-131 472.6 525 60.8
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 8.8e-131 471.5 568 58.8
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.1e-130 471.1 547 60.3
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 3.7e-129 466.1 576 54.2
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 4.8e-129 465.7 540 58.0
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 1.8e-128 463.8 538 58.9
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 2.0e-127 460.3 530 62.3
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 3.5e-127 459.5 543 59.1
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 4.5e-127 459.1 554 57.2
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 4.5e-127 459.1 536 57.3
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 4.5e-127 459.1 539 61.4
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 5.9e-127 458.8 530 59.1
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 1.3e-126 457.6 544 62.5
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 2.9e-126 456.4 561 57.2
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 5.0e-126 455.7 575 56.5
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 6.5e-126 455.3 542 57.4
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 6.5e-126 455.3 543 60.2
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 6.5e-126 455.3 534 51.1
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 8.5e-126 454.9 554 57.8
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 1.2e-124 451.1 567 55.4
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.1e-124 450.3 539 57.5
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 2.7e-124 449.9 574 56.8
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 3.6e-124 449.5 537 50.7
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 6.1e-124 448.7 539 58.6
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 1.4e-123 447.6 537 56.4
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 2.3e-123 446.8 527 57.3
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 2.3e-123 446.8 531 57.3
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 4.0e-123 446.0 560 54.8
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 5.2e-123 445.7 552 58.2
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 2.0e-122 443.7 558 59.5
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 3.1e-120 436.4 531 58.9
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 4.1e-120 436.0 534 58.6
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 2.0e-119 433.7 544 55.7
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.7e-119 433.3 612 53.8
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 2.7e-119 433.3 576 52.1
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 6.5e-118 428.7 539 58.3
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 3.2e-117 426.4 610 55.6
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 9.4e-117 424.9 544 56.8
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 4.7e-116 422.5 541 57.5
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 6.1e-116 422.2 540 55.7
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.0e-116 421.8 523 55.8
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 1.0e-115 421.4 529 55.6
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.3e-115 420.2 520 55.4
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 4.0e-115 419.5 541 53.6
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 5.2e-115 419.1 536 56.7
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.6e-114 416.8 526 56.8
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 2.6e-114 416.8 530 50.0
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 3.4e-114 416.4 549 55.4
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 4.4e-114 416.0 524 59.7
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 4.4e-114 416.0 522 57.9
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 9.8e-114 414.8 523 55.4
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 3.7e-113 412.9 582 52.1
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 2.7e-111 406.8 548 48.9
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.0e-110 404.8 501 48.7
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.3e-110 404.4 570 50.7
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 1.9e-109 400.6 523 46.5
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 2.5e-109 400.2 554 53.6
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 3.2e-109 399.8 553 55.3
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 4.7e-108 396.0 529 46.3
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 1.0e-107 394.8 543 46.4
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 6.8e-107 392.1 575 52.3
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 4.4e-106 389.4 575 52.7
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 3.7e-105 386.3 551 51.9
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 3.3e-101 373.2 512 55.7
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 4.7e-100 369.4 546 51.8
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 4.4e-98 362.8 542 47.0
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 7.5e-98 362.1 535 50.5
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 3.3e-93 346.7 597 50.1
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.6e-84 317.8 349 58.7
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 3.1e-83 313.5 515 43.7
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 4.0e-83 313.2 563 48.5
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 6.8e-83 312.4 347 54.8
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 4.6e-79 299.7 260 70.4
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 2.8e-76 290.4 479 45.3
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 4.0e-75 286.6 480 42.1
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 3.4e-74 283.5 514 37.9
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 2.1e-71 274.2 276 65.2
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 5.6e-69 266.2 554 35.7
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 7.3e-69 265.8 365 51.8
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 7.6e-66 255.8 535 39.8
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 3.2e-56 223.8 198 62.1
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 6.7e-54 216.1 241 51.5
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 8.7e-54 215.7 161 71.4
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 3.3e-53 213.8 212 58.0
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.6e-52 211.5 370 49.5
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 6.2e-52 209.5 348 44.8
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 1.8e-51 208.0 220 58.2
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 1.8e-51 208.0 220 58.2
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 1.1e-48 198.7 245 46.1
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.8e-43 181.4 118 78.0
BcaB02g10018 Brassica carinata HOM05D004813 ORTHO05D005889 2.4e-43 181.0 182 82.4
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 3.1e-35 154.1 253 38.7
SEGI_16864 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 4.8e-28 130.2 100 66.0
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 8.5e-25 119.4 142 51.4
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 1.1e-19 102.4 197 35.5
Haze_20617 Corylus avellana HOM05D004813 ORTHO05D005889 1.8e-19 101.7 154 43.5
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 9.1e-19 99.4 62 77.4
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.2e-18 99.0 102 60.8
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 2.1e-15 88.2 63 71.4
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 1.0e-14 85.9 48 87.5
Potri.003G194550 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.3e-12 79.0 85 51.8
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 3.7e-12 77.4 79 51.9
BcaC06g34714 Brassica carinata HOM05D000589 ORTHO05D001885 1.4e-11 75.5 47 85.1
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 1.8e-11 75.1 77 49.4
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.8e-11 75.1 69 59.4
SalBow1G5081 Salvia bowleyana HOM05D004813 ORTHO05D018488 1.9e-08 65.1 74 51.4
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 3.2e-08 64.3 37 78.4
MBI14_g41770_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-07 62.0 69 52.2
Mapoly0050s0001 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.8e-06 58.5 98 38.8
arahy.Tifrunner.gnm1.ann1.YI6NTU Arachis hypogaea HOM05D004813 ORTHO05D005889 2.3e-06 58.2 67 49.3


User provided reference genes

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