Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05206 Brassica carinata HOM05D003223 ORTHO05D039635 5.9e-35 150.2 71 100.0
BcaNung05205 Brassica carinata HOM05D003223 ORTHO05D039635 4.1e-28 127.5 87 75.9
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 6.6e-18 93.6 86 60.5
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 3.3e-17 91.3 86 59.3
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 4.3e-17 90.9 86 58.1
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 4.3e-17 90.9 86 58.1
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 4.3e-17 90.9 86 58.1
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 5.6e-17 90.5 86 57.0
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 1.1e-15 86.3 85 54.1
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 5.2e-15 84.0 86 54.7
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 8.9e-15 83.2 85 54.1
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.2e-14 82.8 85 52.9
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.2e-14 82.8 85 52.9
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.2e-14 82.8 85 52.9
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 1.5e-14 82.4 85 52.9
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.5e-14 82.4 85 51.8
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 1.5e-14 82.4 85 52.9
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 2.0e-14 82.0 86 52.3
CARHR190170 Cardamine hirsuta HOM05D003223 ORTHO05D004865 2.6e-14 81.6 86 53.5
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 3.4e-14 81.3 86 52.3
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 5.8e-14 80.5 85 51.8
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 9.9e-14 79.7 85 51.8
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 9.9e-14 79.7 85 51.8
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 9.9e-14 79.7 85 52.9
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 9.9e-14 79.7 85 52.9
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 1.3e-13 79.3 85 50.6
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 1.7e-13 79.0 86 50.0
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 1.7e-13 79.0 85 51.8
Hma1.2p1_1945F.1_g308620 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 1.7e-13 79.0 85 51.8
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 2.2e-13 78.6 85 51.8
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 2.2e-13 78.6 85 51.8
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 2.2e-13 78.6 85 50.6
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 2.9e-13 78.2 85 50.6
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 2.9e-13 78.2 85 50.6
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 2.9e-13 78.2 85 51.8
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 2.9e-13 78.2 85 50.6
TAR544G0002 Trochodendron aralioides HOM05D003223 ORTHO05D004865 2.9e-13 78.2 86 51.2
TAR633G2269 Trochodendron aralioides HOM05D003223 ORTHO05D004865 2.9e-13 78.2 86 51.2
BcaB04g19855 Brassica carinata HOM05D003223 ORTHO05D002974 3.7e-13 77.8 86 53.5
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 3.7e-13 77.8 86 50.0
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 4.9e-13 77.4 86 48.8
Cpa.g.sc170.60 Carica papaya HOM05D003223 ORTHO05D004865 4.9e-13 77.4 85 50.6
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 4.9e-13 77.4 85 50.6
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 4.9e-13 77.4 85 49.4
SGA_v2.0_scaffold5281G54621 Striga asiatica HOM05D003223 ORTHO05D004865 4.9e-13 77.4 85 49.4
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 6.4e-13 77.0 86 48.8
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 6.4e-13 77.0 85 49.4
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 6.4e-13 77.0 85 50.6
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 6.4e-13 77.0 85 49.4
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 6.4e-13 77.0 85 49.4
Oeu024852.1 Olea europaea HOM05D003223 ORTHO05D004865 6.4e-13 77.0 85 50.6
Oeu044063.4 Olea europaea HOM05D003223 ORTHO05D004865 6.4e-13 77.0 85 50.6
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 6.4e-13 77.0 85 50.6
TAR636G0413 Trochodendron aralioides HOM05D003223 ORTHO05D004865 6.4e-13 77.0 86 50.0
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 8.3e-13 76.6 86 48.8
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 8.3e-13 76.6 86 48.8
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 8.3e-13 76.6 86 48.8
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 8.3e-13 76.6 85 49.4
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 8.3e-13 76.6 85 50.6
SEGI_06157 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 8.3e-13 76.6 86 48.8
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 8.3e-13 76.6 86 48.8
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 8.3e-13 76.6 86 48.8
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 8.3e-13 76.6 85 50.6
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 1.1e-12 76.3 85 50.6
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 1.1e-12 76.3 85 49.4
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 1.1e-12 76.3 85 49.4
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 1.1e-12 76.3 85 49.4
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 1.4e-12 75.9 85 49.4
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 1.4e-12 75.9 85 48.2
ATR0064G088 Amborella trichopoda HOM05D003223 ORTHO05D004865 1.9e-12 75.5 86 45.3
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 50.6
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 48.2
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 49.4
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 49.4
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 49.4
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 48.2
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 50.6
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 49.4
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 49.4
vmacro06742 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 49.4
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 1.9e-12 75.5 85 49.4
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 2.4e-12 75.1 85 50.6
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 2.4e-12 75.1 85 48.2
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 2.4e-12 75.1 85 49.4
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 2.4e-12 75.1 85 49.4
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 2.4e-12 75.1 85 48.2
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 2.4e-12 75.1 85 49.4
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 3.2e-12 74.7 85 49.4
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 3.2e-12 74.7 86 47.7
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 3.2e-12 74.7 85 51.8
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 3.2e-12 74.7 85 49.4
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 3.2e-12 74.7 85 49.4
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 4.1e-12 74.3 85 50.6
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 4.1e-12 74.3 85 48.2
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 5.4e-12 73.9 85 50.6
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 5.4e-12 73.9 86 48.8
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 5.4e-12 73.9 85 49.4
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 7.1e-12 73.6 85 47.1
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 7.1e-12 73.6 86 47.7
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 9.2e-12 73.2 85 47.1
Sopen01g040530 Solanum pennellii HOM05D003223 ORTHO05D004865 9.2e-12 73.2 86 47.7
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 9.2e-12 73.2 86 47.7
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 9.2e-12 73.2 86 47.7
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.6e-11 72.4 85 45.9
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 1.6e-11 72.4 86 48.8
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 1.6e-11 72.4 86 47.7
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 1.6e-11 72.4 86 47.7
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 2.1e-11 72.0 85 48.2
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 2.7e-11 71.6 86 47.7
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 3.5e-11 71.2 85 47.1
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 4.6e-11 70.9 85 48.2
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 6.0e-11 70.5 86 46.5
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 6.0e-11 70.5 85 45.9
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 7.8e-11 70.1 86 47.7
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 1.0e-10 69.7 86 46.5
C09p07580 Brassica napus HOM05D002664 ORTHO05D002974 1.3e-10 69.3 56 67.9
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 3.0e-10 68.2 85 48.2
CiPaw.16G118900 Carya illinoinensis HOM05D003223 ORTHO05D004865 5.1e-10 67.4 85 48.2
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 3.3e-09 64.7 85 45.9
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 4.3e-09 64.3 85 44.7


User provided reference genes

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