Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05205 Brassica carinata HOM05D003223 ORTHO05D039635 8.0e-70 266.9 130 100.0
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 1.3e-43 179.9 112 81.2
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 1.3e-43 179.9 112 81.2
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 1.3e-43 179.9 112 81.2
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 1.3e-43 179.9 112 81.2
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 1.3e-43 179.9 112 81.2
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 1.3e-43 179.9 112 81.2
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 1.3e-43 179.9 112 81.2
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 3.7e-43 178.3 112 80.4
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 3.7e-43 178.3 112 80.4
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 3.7e-43 178.3 112 80.4
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 2.4e-42 175.6 112 78.6
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 1.2e-41 173.3 112 76.8
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 1.2e-41 173.3 112 76.8
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 1.6e-41 172.9 112 76.8
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 1.6e-41 172.9 112 75.9
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 2.0e-41 172.6 112 75.9
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 3.9e-40 168.3 112 75.0
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 8.6e-40 167.2 112 75.0
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 4.3e-39 164.9 112 72.3
CARHR190170 Cardamine hirsuta HOM05D003223 ORTHO05D004865 1.6e-38 162.9 112 71.4
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 2.8e-38 162.2 112 71.4
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 4.7e-38 161.4 112 69.6
Hma1.2p1_1945F.1_g308620 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 4.7e-38 161.4 112 69.6
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 6.2e-38 161.0 112 71.4
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 8.0e-38 160.6 112 71.4
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 8.0e-38 160.6 112 70.5
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.1e-37 160.2 112 69.6
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 1.1e-37 160.2 112 71.4
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.4e-37 159.8 112 69.6
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.4e-37 159.8 112 69.6
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 1.4e-37 159.8 112 71.4
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 1.8e-37 159.5 112 69.6
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 1.8e-37 159.5 112 69.6
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 1.8e-37 159.5 112 69.6
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 1.8e-37 159.5 113 69.0
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 2.3e-37 159.1 112 68.8
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 4.0e-37 158.3 112 71.4
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 4.0e-37 158.3 112 67.9
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 5.2e-37 157.9 112 71.4
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 5.2e-37 157.9 112 69.6
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 6.8e-37 157.5 112 69.6
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 6.8e-37 157.5 126 61.9
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 6.8e-37 157.5 112 69.6
Oeu024852.1 Olea europaea HOM05D003223 ORTHO05D004865 6.8e-37 157.5 112 68.8
Cpa.g.sc170.60 Carica papaya HOM05D003223 ORTHO05D004865 8.9e-37 157.1 113 69.0
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 8.9e-37 157.1 112 69.6
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 8.9e-37 157.1 113 69.9
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 8.9e-37 157.1 112 68.8
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 8.9e-37 157.1 112 69.6
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 1.2e-36 156.8 113 67.3
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 1.2e-36 156.8 113 69.0
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 1.2e-36 156.8 112 68.8
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 1.5e-36 156.4 112 67.9
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 1.5e-36 156.4 113 69.0
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 1.5e-36 156.4 112 68.8
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 1.5e-36 156.4 112 67.0
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 2.0e-36 156.0 113 68.1
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 2.0e-36 156.0 112 68.8
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 2.0e-36 156.0 112 68.8
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 2.0e-36 156.0 112 67.0
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 2.0e-36 156.0 112 67.0
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 2.6e-36 155.6 113 67.3
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 2.6e-36 155.6 112 67.0
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 2.6e-36 155.6 112 68.8
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 3.4e-36 155.2 113 67.3
vmacro06742 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 3.4e-36 155.2 112 67.0
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 4.4e-36 154.8 113 67.3
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 4.4e-36 154.8 112 70.5
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 4.4e-36 154.8 112 67.0
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 5.8e-36 154.5 112 68.8
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 5.8e-36 154.5 112 69.6
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 5.8e-36 154.5 112 67.0
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 5.8e-36 154.5 112 69.6
SGA_v2.0_scaffold5281G54621 Striga asiatica HOM05D003223 ORTHO05D004865 5.8e-36 154.5 112 66.1
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 7.5e-36 154.1 113 67.3
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 7.5e-36 154.1 112 67.0
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 9.8e-36 153.7 112 69.6
Oeu044063.4 Olea europaea HOM05D003223 ORTHO05D004865 9.8e-36 153.7 112 67.0
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 1.3e-35 153.3 112 68.8
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 1.3e-35 153.3 112 67.0
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 1.7e-35 152.9 112 66.1
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 1.7e-35 152.9 112 67.0
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 1.7e-35 152.9 112 67.0
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 2.2e-35 152.5 112 65.2
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 2.2e-35 152.5 112 65.2
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 2.9e-35 152.1 113 65.5
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 2.9e-35 152.1 113 66.4
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 3.7e-35 151.8 112 68.8
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 3.7e-35 151.8 112 65.2
TAR544G0002 Trochodendron aralioides HOM05D003223 ORTHO05D004865 3.7e-35 151.8 112 66.1
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 3.7e-35 151.8 111 68.5
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 4.9e-35 151.4 112 64.3
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 6.4e-35 151.0 112 66.1
TAR636G0413 Trochodendron aralioides HOM05D003223 ORTHO05D004865 6.4e-35 151.0 112 66.1
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 8.3e-35 150.6 135 57.0
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 8.3e-35 150.6 112 64.3
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 1.1e-34 150.2 112 67.0
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 1.1e-34 150.2 112 66.1
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 1.1e-34 150.2 112 63.4
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 1.4e-34 149.8 113 65.5
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 1.4e-34 149.8 112 64.3
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 1.4e-34 149.8 113 67.3
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 1.9e-34 149.4 112 64.3
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 1.9e-34 149.4 113 65.5
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 2.4e-34 149.1 135 56.3
Sopen01g040530 Solanum pennellii HOM05D003223 ORTHO05D004865 2.4e-34 149.1 112 64.3
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 2.4e-34 149.1 112 64.3
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 3.2e-34 148.7 112 63.4
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 3.2e-34 148.7 113 64.6
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 9.2e-34 147.1 129 61.2
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 2.7e-33 145.6 112 65.2
SEGI_06157 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 2.7e-33 145.6 113 62.8
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 7.8e-33 144.1 112 61.6
CiPaw.16G118900 Carya illinoinensis HOM05D003223 ORTHO05D004865 1.7e-32 142.9 111 66.7
ATR0064G088 Amborella trichopoda HOM05D003223 ORTHO05D004865 5.1e-32 141.4 112 59.8
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 5.1e-32 141.4 133 56.4
C09p07580 Brassica napus HOM05D002664 ORTHO05D002974 8.6e-32 140.6 90 81.1
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 8.6e-32 140.6 112 62.5
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 9.5e-31 137.1 111 64.9
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 9.5e-31 137.1 111 64.9
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 1.1e-29 133.7 117 59.0
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 1.5e-28 129.8 113 59.3
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 1.5e-28 129.8 111 60.4
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 3.4e-28 128.6 111 59.5
BcaNung05206 Brassica carinata HOM05D003223 ORTHO05D039635 9.9e-28 127.1 87 75.9
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 2.2e-27 125.9 112 58.0
TAR633G2269 Trochodendron aralioides HOM05D003223 ORTHO05D004865 2.2e-27 125.9 93 66.7
BcaB04g19855 Brassica carinata HOM05D003223 ORTHO05D002974 2.3e-24 115.9 86 69.8
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 3.3e-15 85.5 53 73.6
Cre17.g744447 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D004865 2.9e-11 72.4 112 35.7
Nitab4.5_0008354g0050 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.3e-07 58.5 46 60.9
Nitab4.5_0001903g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.1e-06 56.2 51 54.9
PRCOL_00004888 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 3.6e-06 55.5 109 32.1
Cfa027207 Carpinus fangiana HOM05D003223 ORTHO05D004865 6.2e-06 54.7 96 31.2


User provided reference genes

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