Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.8e-102 375.9 189 100.0
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 5.7e-101 370.9 189 98.9
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 5.7e-101 370.9 189 98.9
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 4.5e-98 361.3 184 97.3
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 3.8e-97 358.2 184 96.2
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 6.5e-97 357.5 184 96.2
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 6.5e-97 357.5 184 95.7
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 8.5e-97 357.1 184 95.7
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 4.2e-96 354.8 184 95.7
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 4.2e-96 354.8 184 95.7
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 1.8e-94 349.4 184 95.1
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 1.8e-94 349.4 184 95.1
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 8.8e-94 347.1 190 92.6
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 5.7e-93 344.4 190 91.6
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 3.7e-92 341.7 213 82.6
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 2.9e-89 332.0 184 87.5
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 2.5e-88 328.9 184 86.4
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 2.1e-87 325.9 184 87.0
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 4.4e-85 318.2 189 89.9
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 4.8e-84 314.7 188 82.4
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 8.3e-84 313.9 191 81.7
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 1.2e-82 310.1 187 80.7
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 4.9e-68 261.5 183 65.6
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 1.4e-67 260.0 184 66.8
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.9e-67 259.6 184 66.8
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 7.0e-67 257.7 184 67.4
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 2.7e-66 255.8 176 71.6
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 1.0e-65 253.8 181 66.3
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 1.7e-65 253.1 187 66.8
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.7e-65 253.1 184 64.1
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 2.3e-65 252.7 184 65.8
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 3.9e-65 251.9 175 69.7
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 3.9e-65 251.9 187 66.3
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 8.6e-65 250.8 184 66.3
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.1e-64 250.4 184 66.3
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.9e-64 249.6 184 65.8
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.9e-64 249.6 184 65.8
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 2.5e-64 249.2 175 68.6
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 3.3e-64 248.8 187 65.8
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 7.3e-64 247.7 181 63.0
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.2e-63 246.9 177 66.1
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 1.2e-63 246.9 184 65.2
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 1.6e-63 246.5 181 66.3
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 2.1e-63 246.1 167 69.5
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 2.1e-63 246.1 176 67.0
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 1.1e-62 243.8 183 62.8
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 1.1e-62 243.8 175 69.1
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.1e-62 243.8 175 67.4
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.1e-62 243.8 184 62.5
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.4e-62 243.4 184 63.6
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 2.3e-62 242.7 184 62.0
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 3.1e-62 242.3 187 64.7
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.5e-61 240.0 176 65.9
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 2.0e-61 239.6 184 62.5
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.6e-61 239.2 175 68.0
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 3.4e-61 238.8 176 65.3
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 3.4e-61 238.8 176 64.8
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 3.4e-61 238.8 184 65.8
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 4.4e-61 238.4 176 61.9
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 9.8e-61 237.3 179 64.8
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 9.8e-61 237.3 184 63.0
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 3.7e-60 235.3 176 63.1
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.9e-60 235.0 184 60.9
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 4.9e-60 235.0 176 63.1
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.4e-60 234.6 184 60.9
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 6.4e-60 234.6 184 60.9
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 6.4e-60 234.6 178 62.9
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 8.3e-60 234.2 176 63.6
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 1.1e-59 233.8 184 60.3
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.4e-59 233.4 184 60.3
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.4e-59 233.4 176 63.6
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.9e-59 233.0 168 68.5
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 4.1e-59 231.9 167 66.5
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 5.4e-59 231.5 184 63.6
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 7.0e-59 231.1 183 60.1
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 7.0e-59 231.1 183 61.7
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 1.6e-58 229.9 183 59.6
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.6e-58 229.9 175 62.3
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 2.1e-58 229.6 188 62.2
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 3.5e-58 228.8 180 61.7
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 7.8e-58 227.6 184 59.2
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 1.7e-57 226.5 167 64.7
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 2.3e-57 226.1 167 64.7
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 3.0e-57 225.7 167 64.1
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 5.1e-57 224.9 181 62.4
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 8.6e-57 224.2 170 63.5
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.1e-56 223.8 181 58.0
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 2.5e-56 222.6 182 63.2
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 3.3e-56 222.2 184 62.5
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 4.3e-56 221.9 131 87.0
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 4.3e-56 221.9 168 66.7
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.1e-55 219.5 180 62.2
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 3.6e-55 218.8 181 57.5
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 4.7e-55 218.4 175 62.3
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 4.7e-55 218.4 185 62.2
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 6.2e-55 218.0 164 62.2
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 8.1e-55 217.6 180 59.4
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.1e-54 217.2 116 93.1
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 4.0e-54 215.3 181 55.2
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 8.9e-54 214.2 156 66.7
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 8.9e-54 214.2 182 57.1
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 8.9e-54 214.2 182 57.1
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 9.9e-53 210.7 185 57.3
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 1.7e-52 209.9 171 59.1
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 2.2e-52 209.5 180 55.6
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 2.2e-52 209.5 193 54.9
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 3.7e-52 208.8 184 56.0
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 4.9e-52 208.4 184 56.0
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.3e-49 200.3 181 55.2
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.0e-49 199.1 190 54.7
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.5e-48 196.8 170 58.8
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 4.3e-48 195.3 183 55.7
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 1.1e-43 180.6 165 57.0
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.1e-43 180.6 166 52.4
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 3.2e-43 179.1 169 54.4
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 9.2e-43 177.6 174 52.3
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.1e-40 170.6 144 59.0
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 2.5e-40 169.5 170 50.0
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.1e-38 164.1 169 46.2
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 3.4e-37 159.1 113 63.7
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 2.2e-36 156.4 172 43.0
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 4.9e-36 155.2 146 63.0
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.2e-34 150.6 120 56.7
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 2.7e-34 149.4 129 58.9
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 4.6e-34 148.7 149 52.3
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.1e-32 144.1 99 66.7
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 2.5e-32 142.9 98 70.4
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 9.6e-32 141.0 98 69.4
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 9.6e-32 141.0 98 69.4
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 2.2e-28 129.8 179 41.3
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 2.7e-26 122.9 171 40.4
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.5e-26 122.5 186 37.1
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 6.0e-26 121.7 84 69.0
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 6.0e-26 121.7 84 69.0
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 1.8e-25 120.2 180 40.0
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 1.5e-24 117.1 168 39.9
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 2.1e-23 113.2 68 75.0
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.0e-17 94.4 68 67.6
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 5.1e-17 92.0 78 56.4
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.4e-14 84.0 176 30.1
C04p54390 Brassica napus HOM05D004841 ORTHO05D005874 5.3e-14 82.0 57 78.9
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 6.5e-12 75.1 196 27.6
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 3.2e-11 72.8 131 40.5
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 1.6e-10 70.5 43 76.7
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.5e-08 63.9 46 63.0


User provided reference genes

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