Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.0e-217 760.0 447 100.0
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.8e-214 749.2 447 96.4
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 2.9e-212 741.9 447 96.0
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.4e-211 739.6 447 95.3
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 4.8e-207 724.5 438 95.4
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.6e-202 709.5 444 83.3
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 1.1e-190 670.2 447 87.9
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 3.1e-190 668.7 447 87.7
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 7.0e-190 667.5 447 88.1
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 3.8e-188 661.8 451 86.7
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 1.8e-185 652.9 445 87.2
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 3.4e-168 595.5 447 81.0
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 8.6e-156 554.3 447 74.7
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 3.4e-136 489.2 441 57.1
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 2.2e-135 486.5 438 57.1
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 2.4e-134 483.0 440 57.0
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 2.7e-133 479.6 438 66.2
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 3.3e-131 472.6 435 57.0
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 6.2e-130 468.4 443 54.4
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.4e-129 466.5 439 54.4
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 4.0e-129 465.7 438 64.8
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 9.0e-129 464.5 430 57.0
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 9.0e-129 464.5 430 57.0
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.5e-128 463.8 430 56.3
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 1.5e-128 463.8 440 60.7
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 7.6e-128 461.5 440 54.5
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 4.9e-127 458.8 441 54.0
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 1.1e-126 457.6 440 53.2
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.4e-126 457.2 439 62.9
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 1.2e-125 454.1 453 56.7
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 6.0e-125 451.8 437 53.3
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 2.3e-124 449.9 441 55.1
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 3.0e-124 449.5 442 59.0
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.5e-123 447.2 437 52.6
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 3.3e-123 446.0 442 56.8
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 5.6e-123 445.3 432 54.2
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 5.6e-123 445.3 437 52.6
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 7.3e-123 444.9 442 62.9
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 9.6e-123 444.5 446 52.2
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 4.8e-122 442.2 437 62.0
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.8e-121 440.3 440 63.6
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.8e-121 440.3 445 57.5
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 4.0e-121 439.1 446 52.9
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.2e-120 437.6 437 62.9
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 2.0e-120 436.8 446 57.6
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 2.0e-120 436.8 441 56.5
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 4.9e-119 432.2 440 56.6
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 3.2e-118 429.5 442 55.4
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.2e-117 427.6 446 56.7
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 1.8e-116 423.7 439 62.9
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 3.9e-116 422.5 447 59.7
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.5e-115 420.6 450 54.7
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.9e-115 420.2 441 50.8
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 4.3e-115 419.1 462 50.2
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 5.6e-115 418.7 439 54.4
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 3.7e-114 416.0 399 57.9
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 3.7e-114 416.0 450 55.3
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 3.7e-114 416.0 437 60.9
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 2.4e-113 413.3 437 60.9
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 5.3e-113 412.1 440 49.5
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 9.0e-113 411.4 436 61.5
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 1.7e-111 407.1 421 58.2
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 4.9e-111 405.6 437 60.6
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 4.9e-111 405.6 440 49.3
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.4e-110 404.1 439 53.3
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 2.5e-110 403.3 440 50.5
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 3.2e-110 402.9 444 51.6
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 4.2e-110 402.5 437 57.0
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 4.6e-109 399.1 504 45.0
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.3e-108 396.7 436 60.1
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 3.9e-108 396.0 435 54.3
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 5.1e-108 395.6 416 53.1
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 5.1e-108 395.6 442 52.0
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 1.9e-107 393.7 444 57.7
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 3.3e-107 392.9 444 47.7
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 5.6e-107 392.1 436 59.4
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 2.1e-106 390.2 456 54.6
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 2.8e-106 389.8 440 50.7
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 3.7e-106 389.4 438 59.8
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 6.2e-106 388.7 411 61.1
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 2.4e-105 386.7 438 51.1
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 3.1e-105 386.3 442 59.0
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 1.2e-104 384.4 417 60.4
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 2.0e-104 383.6 443 50.1
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 1.1e-102 377.9 437 47.8
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 4.6e-101 372.5 373 62.5
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.3e-99 365.9 412 48.3
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 3.1e-97 359.8 281 62.3
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 9.0e-97 358.2 428 56.8
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.2e-95 353.6 277 63.2
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 7.9e-93 345.1 433 45.7
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 1.8e-92 344.0 445 54.8
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.1e-91 341.3 369 53.9
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 7.4e-91 338.6 329 59.9
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 6.3e-90 335.5 282 56.4
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 3.1e-89 333.2 341 50.1
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 3.3e-83 313.2 307 72.0
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 7.0e-81 305.4 248 60.1
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 2.2e-79 300.4 317 52.7
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.6e-72 276.9 276 52.2
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 2.0e-67 260.8 275 61.1
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 2.8e-66 256.9 217 62.7
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 1.1e-62 245.0 325 41.8
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 3.2e-62 243.4 330 46.4
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 1.9e-54 217.6 416 43.3
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.4e-52 211.5 405 42.5
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 2.0e-48 197.6 399 34.6
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 2.7e-48 197.2 404 41.3
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.1e-46 191.8 159 59.1
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 3.6e-45 186.8 111 86.5
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 4.6e-40 169.9 399 38.6
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 6.0e-40 169.5 409 38.9
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 1.2e-37 161.8 405 38.5
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 6.8e-36 156.0 269 37.2
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.2e-34 151.0 153 52.3
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.1e-32 144.4 127 59.1
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 3.5e-32 143.7 111 61.3
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 5.6e-30 136.3 98 63.3
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 9.5e-30 135.6 215 48.4
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.6e-29 134.8 118 55.1
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 4.4e-27 126.7 210 36.7
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 2.4e-25 120.9 109 54.1
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 3.5e-24 117.1 104 56.7
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 7.8e-24 115.9 72 73.6
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 2.3e-23 114.4 131 47.3
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-20 105.5 76 63.2
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.2e-16 92.0 192 33.3
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 2.1e-13 81.3 55 65.5
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 2.1e-13 81.3 65 58.5
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.2e-11 75.5 66 54.5
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-08 65.5 66 53.0
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 2.7e-08 64.3 41 70.7
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 1.7e-07 61.6 50 58.0
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 8.7e-07 59.3 41 63.4
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 1.5e-06 58.5 38 68.4
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 7.3e-06 56.2 38 65.8


User provided reference genes

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