Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 4.0e-103 378.3 212 100.0
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 1.0e-90 337.0 213 91.5
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 5.6e-89 331.3 212 88.2
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 1.4e-87 326.6 214 90.7
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 1.3e-85 320.1 213 87.8
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 6.4e-85 317.8 212 88.2
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 8.4e-85 317.4 209 90.0
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 2.3e-82 309.3 212 84.4
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 6.6e-82 307.8 212 82.5
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 1.7e-77 293.1 213 82.2
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.1e-76 290.4 212 80.7
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 2.4e-76 289.3 212 80.7
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 2.1e-75 286.2 213 80.8
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 2.7e-75 285.8 211 81.5
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 1.1e-73 280.4 213 79.8
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 6.9e-63 244.6 222 64.0
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 2.5e-60 236.1 151 88.7
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 4.2e-60 235.3 161 89.4
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 2.3e-58 229.6 151 89.4
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 5.3e-55 218.4 136 93.4
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 3.8e-53 212.2 210 63.3
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.1e-51 206.5 192 64.6
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 1.8e-50 203.4 193 62.7
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 3.1e-47 192.6 204 61.3
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.1e-47 192.2 205 61.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 6.9e-47 191.4 220 58.6
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.2e-46 190.7 214 59.3
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.0e-46 189.9 205 60.5
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 3.4e-46 189.1 221 58.4
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 5.9e-46 188.3 205 60.0
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.7e-45 186.8 213 56.8
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 3.8e-45 185.7 224 57.6
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.0e-45 185.3 224 57.6
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.5e-45 184.5 223 57.0
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 8.5e-45 184.5 210 55.7
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 1.1e-44 184.1 173 61.3
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 1.9e-44 183.3 213 57.3
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 5.5e-44 181.8 165 62.4
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 9.4e-44 181.0 224 54.9
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.2e-43 180.6 174 58.0
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 1.0e-42 177.6 201 58.2
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 1.4e-42 177.2 219 53.9
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 1.4e-42 177.2 149 61.1
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.3e-42 176.4 207 57.0
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 3.9e-42 175.6 190 54.7
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 6.7e-42 174.9 162 63.6
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 6.7e-42 174.9 162 61.7
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 8.8e-42 174.5 203 55.7
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.5e-41 173.7 164 64.6
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 1.5e-41 173.7 211 52.6
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 2.0e-41 173.3 162 59.3
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 3.3e-41 172.6 162 54.9
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 5.7e-41 171.8 212 51.9
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 7.4e-41 171.4 202 51.0
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 7.4e-41 171.4 150 67.3
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 2.2e-40 169.9 159 64.8
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 2.4e-39 166.4 215 53.0
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 2.4e-39 166.4 214 54.7
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 3.1e-39 166.0 166 62.7
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 4.1e-39 165.6 214 55.6
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 7.0e-39 164.9 205 53.2
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 9.1e-39 164.5 111 71.2
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 3.5e-38 162.5 163 61.3
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 1.0e-37 161.0 214 54.2
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.5e-36 157.1 219 52.1
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 2.5e-36 156.4 109 69.7
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 3.2e-36 156.0 175 57.1
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 4.2e-36 155.6 168 56.0
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 7.2e-36 154.8 110 68.2
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 9.4e-36 154.5 114 70.2
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 9.4e-36 154.5 212 52.4
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 9.4e-36 154.5 164 56.7
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 3.6e-35 152.5 218 51.4
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.8e-34 150.2 111 65.8
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 2.3e-34 149.8 108 68.5
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 3.0e-34 149.4 112 67.0
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 8.8e-34 147.9 171 55.0
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.5e-33 147.1 164 57.3
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 7.5e-33 144.8 101 89.1
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.7e-32 143.7 182 53.3
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 2.8e-32 142.9 99 89.9
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 2.8e-32 142.9 103 67.0
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 5.3e-31 138.7 183 50.8
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 2.7e-30 136.3 235 43.8
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 1.7e-29 133.7 111 58.6
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.9e-28 130.2 99 66.7
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 5.5e-28 128.6 238 44.1
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.7e-24 117.1 218 41.3
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 2.2e-24 116.7 111 53.2
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 4.1e-23 112.5 87 62.1
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 2.7e-22 109.8 62 95.2
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 7.7e-22 108.2 74 66.2
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 1.0e-21 107.8 163 54.6
Haze_10292 Corylus avellana HOM05D004087 ORTHO05D004787 1.3e-21 107.5 249 36.9
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 2.2e-21 106.7 116 63.8
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.9e-21 106.3 169 51.5
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 6.5e-21 105.1 188 49.5
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 6.5e-21 105.1 183 49.2
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.9e-20 103.6 92 58.7
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.9e-20 103.6 89 64.0
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.5e-20 103.2 112 50.9
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.5e-20 103.2 115 49.6
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 3.2e-20 102.8 183 47.5
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 5.5e-20 102.1 92 59.8
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 7.2e-20 101.7 194 41.2
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 7.2e-20 101.7 116 48.3
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 7.2e-20 101.7 112 51.8
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.6e-19 100.5 123 49.6
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.6e-19 100.5 123 49.6
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 2.1e-19 100.1 189 37.6
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.1e-19 100.1 91 56.0
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 2.7e-19 99.8 92 54.3
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 3.6e-19 99.4 92 55.4
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 4.7e-19 99.0 164 41.5
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 4.7e-19 99.0 91 54.9
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 8.0e-19 98.2 107 52.3
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.0e-18 97.8 112 49.1
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.4e-18 97.4 110 48.2
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 1.4e-18 97.4 92 53.3
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 1.8e-18 97.1 88 55.7
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 2.3e-18 96.7 187 38.5
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 3.0e-18 96.3 112 50.0
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.0e-18 96.3 91 57.1
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 4.0e-18 95.9 112 48.2
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 5.2e-18 95.5 91 54.9
RhsimUnG0040800 Rhododendron simsii HOM05D004087 ORTHO05D004787 8.8e-18 94.7 103 49.5
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 1.2e-17 94.4 119 56.3
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.2e-17 94.4 228 36.8
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.2e-17 94.4 92 53.3
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 1.5e-17 94.0 115 52.2
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 1.5e-17 94.0 86 59.3
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 2.0e-17 93.6 89 57.3
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 2.6e-17 93.2 193 36.8
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 2.6e-17 93.2 193 36.8
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.6e-17 93.2 188 44.1
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 3.4e-17 92.8 89 53.9
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 4.4e-17 92.4 92 53.3
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 4.4e-17 92.4 60 75.0
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 5.7e-17 92.0 180 43.3
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 7.5e-17 91.7 188 42.6
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 7.5e-17 91.7 92 52.2
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 1.3e-16 90.9 92 52.2
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 2.2e-16 90.1 92 47.8
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 3.7e-16 89.4 197 42.6
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 4.9e-16 89.0 195 40.0
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 8.3e-16 88.2 191 40.3
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 7.0e-15 85.1 92 45.7
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 1.2e-14 84.3 137 40.1
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 2.0e-14 83.6 79 57.0
Cpa.g.sc106.30 Carica papaya HOM05D004087 ORTHO05D004787 3.5e-14 82.8 94 61.7
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 3.5e-14 82.8 89 50.6
AUR62030868 Chenopodium quinoa HOM05D004087 ORTHO05D004787 1.0e-13 81.3 91 49.5
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 3.3e-12 76.3 89 46.1
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 4.3e-12 75.9 107 36.4
A07p42060 Brassica napus HOM05D000237 ORTHO05D017465 1.6e-11 73.9 72 62.5
Lj5A221T58 Lonicera japonica HOM05D004087 ORTHO05D004787 1.0e-10 71.2 141 48.2
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 1.4e-10 70.9 90 41.1
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 2.3e-10 70.1 61 59.0
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 4.0e-10 69.3 107 49.5
Lsat_1_v5_gn_3_112521 Lactuca sativa HOM05D004087 ORTHO05D004787 2.2e-08 63.5 90 56.7
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.7e-08 62.8 112 38.4
Lsat_1_v5_gn_9_118200 Lactuca sativa HOM05D004087 ORTHO05D004787 8.3e-08 61.6 90 54.4
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.1e-07 61.2 66 50.0
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 2.4e-07 60.1 55 58.2
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 2.4e-07 60.1 76 46.1
Os02g0531900 Oryza sativa ssp. japonica HOM05D004087 ORTHO05D004787 4.1e-07 59.3 50 58.0
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 9.2e-07 58.2 51 60.8


User provided reference genes

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