Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04530 Brassica carinata HOM05D000278 ORTHO05D032816 1.7e-28 128.6 67 100.0
A05p43400 Brassica napus HOM05D000278 ORTHO05D004031 9.9e-16 86.3 55 85.5
BcaC05g29888 Brassica carinata HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BcaC05g30297 Brassica carinata HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BcaC09g47768 Brassica carinata HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BcaNung04528 Brassica carinata HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
A01p41240 Brassica napus HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
A03p33480 Brassica napus HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BNapus_Darmor_BZH_scaffold_78p00470 Brassica napus HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
C03p40680 Brassica napus HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
C05p63100 Brassica napus HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BolC1t05791H Brassica oleracea HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BolC1t05795H Brassica oleracea HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BolC3t16333H Brassica oleracea HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BolC5t34962H Brassica oleracea HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BraA01t04547Z Brassica rapa HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BraA03t12523Z Brassica rapa HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
BraA05t23080Z Brassica rapa HOM05D000278 ORTHO05D004031 1.3e-15 85.9 48 93.8
AL3G13870 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 2.9e-15 84.7 48 91.7
AL6G29410 Arabidopsis lyrata HOM05D000278 ORTHO05D004031 2.9e-15 84.7 48 91.7
AT3G03960 Arabidopsis thaliana HOM05D000278 ORTHO05D004031 2.9e-15 84.7 48 91.7
Carub.0003s0321 Capsella rubella HOM05D000278 ORTHO05D004031 2.9e-15 84.7 48 91.7
CARHR078090 Cardamine hirsuta HOM05D000278 ORTHO05D004031 2.9e-15 84.7 48 91.7
Thhalv10020448m.g Eutrema salsugineum HOM05D000278 ORTHO05D004031 2.9e-15 84.7 48 91.7
Sp3g02930 Schrenkiella parvula HOM05D000278 ORTHO05D004031 2.9e-15 84.7 48 91.7
THA.LOC104802866 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 2.9e-15 84.7 48 91.7
THA.LOC104820734 Tarenaya hassleriana HOM05D000278 ORTHO05D004031 2.9e-15 84.7 48 91.7
Cc06_g22900 Coffea canephora HOM05D000278 ORTHO05D004031 3.8e-15 84.3 48 89.6
MSTRG.10861 Avicennia marina HOM05D000278 ORTHO05D004031 8.4e-15 83.2 48 89.6
Cpa.g.sc51.110 Carica papaya HOM05D000278 ORTHO05D004031 8.4e-15 83.2 48 89.6
Dinv37012 Davidia involucrata HOM05D000278 ORTHO05D004031 8.4e-15 83.2 48 89.6
Dinv14581 Davidia involucrata HOM05D000278 ORTHO05D004031 1.1e-14 82.8 48 87.5
BcaC05g30238 Brassica carinata HOM05D000278 ORTHO05D004031 1.4e-14 82.4 43 95.3
CAN.G410.8 Capsicum annuum HOM05D000278 ORTHO05D004031 1.4e-14 82.4 48 87.5
ClCG10G013350 Citrullus lanatus HOM05D000278 ORTHO05D004031 1.4e-14 82.4 48 85.4
MELO3C026888.2 Cucumis melo HOM05D000278 ORTHO05D004031 1.4e-14 82.4 48 85.4
CsaV3_3G043280 Cucumis sativus L. HOM05D000278 ORTHO05D004031 1.4e-14 82.4 48 85.4
Nitab4.5_0002187g0060 Nicotiana tabacum HOM05D000278 ORTHO05D004031 1.4e-14 82.4 48 85.4
Nitab4.5_0006695g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004031 1.4e-14 82.4 48 85.4
Rhsim01G0190500 Rhododendron simsii HOM05D000278 ORTHO05D004031 1.4e-14 82.4 48 85.4
Rhsim03G0001500 Rhododendron simsii HOM05D000278 ORTHO05D004031 1.4e-14 82.4 48 85.4
SGA_v2.0_scaffold274G46518 Striga asiatica HOM05D000278 ORTHO05D004031 1.4e-14 82.4 48 85.4
Lj1g0028009 Lotus japonicus HOM05D000278 ORTHO05D004031 1.9e-14 82.0 48 85.4
Lalb_Chr21g0316131 Lupinus albus HOM05D000278 ORTHO05D004031 1.9e-14 82.0 48 85.4
Lalb_Chr21g0316151 Lupinus albus HOM05D000278 ORTHO05D004031 1.9e-14 82.0 48 85.4
Peaxi162Scf00071g00913 Petunia axillaris HOM05D000278 ORTHO05D004031 1.9e-14 82.0 48 83.3
Aa31LG5G14540 Aethionema arabicum HOM05D000278 ORTHO05D004031 2.4e-14 81.6 48 89.6
CiPaw.06G089700 Carya illinoinensis HOM05D000278 ORTHO05D004031 2.4e-14 81.6 48 83.3
CiPaw.09G001600 Carya illinoinensis HOM05D000278 ORTHO05D004031 2.4e-14 81.6 48 83.3
CDE01G0608 Ceratophyllum demersum HOM05D000278 ORTHO05D004031 2.4e-14 81.6 48 85.4
Peaxi162Scf01108g00120 Petunia axillaris HOM05D000278 ORTHO05D004031 2.4e-14 81.6 48 85.4
PGR142G1170 Punica granatum HOM05D000278 ORTHO05D004031 2.4e-14 81.6 48 83.3
Solyc01g088080.3 Solanum lycopersicum HOM05D000278 ORTHO05D004031 2.4e-14 81.6 48 85.4
Sopen01g034950 Solanum pennellii HOM05D000278 ORTHO05D004031 2.4e-14 81.6 48 85.4
MSTRG.26066 Avicennia marina HOM05D000278 ORTHO05D004031 3.2e-14 81.3 48 85.4
CSS0030797 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 3.2e-14 81.3 55 76.4
Ciclev10019583m.g Citrus clementina HOM05D000278 ORTHO05D004031 3.2e-14 81.3 48 87.5
DCAR_019879 Daucus carota HOM05D000278 ORTHO05D004031 3.2e-14 81.3 48 83.3
Nn7g35821 Nelumbo nucifera HOM05D000278 ORTHO05D004031 3.2e-14 81.3 48 83.3
PGSC0003DMG400006829 Solanum tuberosum HOM05D000278 ORTHO05D004031 3.2e-14 81.3 48 83.3
CSS0000727 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 4.2e-14 80.9 48 85.4
Hma1.2p1_1145F.1_g261380 Hydrangea macrophylla HOM05D000278 ORTHO05D004031 4.2e-14 80.9 48 85.4
Lj1A1137T80 Lonicera japonica HOM05D000278 ORTHO05D004031 4.2e-14 80.9 48 85.4
Potri.013G058500 Populus trichocarpa HOM05D000278 ORTHO05D004031 4.2e-14 80.9 48 85.4
Rhsim03G0008300 Rhododendron simsii HOM05D000278 ORTHO05D004031 4.2e-14 80.9 43 88.4
Sabra13G0052100 Salix brachista HOM05D000278 ORTHO05D004031 4.2e-14 80.9 48 85.4
TPR.G36870 Trifolium pratense HOM05D000278 ORTHO05D004031 4.2e-14 80.9 48 83.3
TAR369G0685 Trochodendron aralioides HOM05D000278 ORTHO05D004031 4.2e-14 80.9 48 83.3
Migut.C00324 Erythranthe guttata HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 83.3
Migut.J01891 Erythranthe guttata HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 83.3
Glyma.02G071900 Glycine max HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 83.3
Glyma.16G153200 Glycine max HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 83.3
Lsat_1_v5_gn_4_42920 Lactuca sativa HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 81.2
MD17G1264600 Malus domestica HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 81.2
Phvul.004G079800 Phaseolus vulgaris HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 83.3
Psat0s3407g0040 Pisum sativum HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 81.2
Potri.019G034200 Populus trichocarpa HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 83.3
Prupe.3G114000 Prunus persica HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 81.2
Sabra19G0042100 Salix brachista HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 83.3
SalBow8G1634 Salvia bowleyana HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 81.2
Sed0026355 Sechium edule HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 83.3
TWI32G0619 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 5.5e-14 80.5 64 71.9
VMungo0464G1078 Vigna mungo HOM05D000278 ORTHO05D004031 5.5e-14 80.5 48 83.3
EL10Ac3g06816 Beta vulgaris HOM05D000278 ORTHO05D004031 7.1e-14 80.1 48 81.2
EL10Ac5g12659 Beta vulgaris HOM05D000278 ORTHO05D004031 7.1e-14 80.1 48 81.2
CSS0002970 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 7.1e-14 80.1 48 85.4
Cfa016437 Carpinus fangiana HOM05D000278 ORTHO05D004031 7.1e-14 80.1 48 81.2
Haze_19414 Corylus avellana HOM05D000278 ORTHO05D004031 7.1e-14 80.1 48 81.2
Atru.chr2.1362 Acer truncatum HOM05D000278 ORTHO05D004031 9.3e-14 79.7 48 85.4
ATR0697G160 Amborella trichopoda HOM05D000278 ORTHO05D004031 9.3e-14 79.7 48 85.4
CSS0036387 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 9.3e-14 79.7 48 83.3
Ca_25711_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 9.3e-14 79.7 48 81.2
Lj8A582T9 Lonicera japonica HOM05D000278 ORTHO05D004031 9.3e-14 79.7 48 83.3
Manes.08G143700 Manihot esculenta HOM05D000278 ORTHO05D004031 9.3e-14 79.7 48 83.3
unitig_899.g15071 Utricularia gibba HOM05D000861 ORTHO05D004031 9.3e-14 79.7 64 68.8
GSVIVG01033394001 Vitis vinifera HOM05D000278 ORTHO05D004031 9.3e-14 79.7 48 83.3
CSS0033021 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004031 1.2e-13 79.3 48 85.4
QL07p019694 Quercus lobata HOM05D000278 ORTHO05D004031 1.2e-13 79.3 48 83.3
QL07p030356 Quercus lobata HOM05D000278 ORTHO05D004031 1.2e-13 79.3 48 83.3
QL07p030735 Quercus lobata HOM05D000278 ORTHO05D004031 1.2e-13 79.3 48 83.3
Actinidia30554 Actinidia chinensis HOM05D000278 ORTHO05D004031 1.6e-13 79.0 48 79.2
CANSAT25G3570 Cannabis sativa HOM05D000278 ORTHO05D004031 1.6e-13 79.0 48 79.2
Oeu012404.4 Olea europaea HOM05D000278 ORTHO05D004031 1.6e-13 79.0 48 79.2
Os03g0804800 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004031 1.6e-13 79.0 48 79.2
PSO339G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 1.6e-13 79.0 48 79.2
PSO384G2052 Papaver somniferum HOM05D000278 ORTHO05D004031 1.6e-13 79.0 48 79.2
Prupe.3G113600 Prunus persica HOM05D000278 ORTHO05D004031 1.6e-13 79.0 48 79.2
Sc13g0002700 Simmondsia chinensis HOM05D000278 ORTHO05D004031 1.6e-13 79.0 48 85.4
HPP92_017517 Vanilla planifolia HOM05D000278 ORTHO05D004031 1.6e-13 79.0 50 78.0
FvH4_6g27660 Fragaria vesca HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 81.2
FAN02G2614 Fragaria x ananassa HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 81.2
FAN05G2827 Fragaria x ananassa HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 81.2
FAN14G1825 Fragaria x ananassa HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 81.2
Gohir.A11G258900 Gossypium hirsutum HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 81.2
Gohir.D11G269000 Gossypium hirsutum HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 81.2
Gorai.007G288800 Gossypium raimondii HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 81.2
MD09G1235600 Malus domestica HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 79.2
MD17G1264300 Malus domestica HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 79.2
Medtr1g030650 Medicago truncatula HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 79.2
RcHm_v2.0_Chr2g0130701 Rosa chinensis HOM05D000278 ORTHO05D004031 2.7e-13 78.2 48 81.2
Ah.13g075330 Amaranthus hybridus HOM05D000278 ORTHO05D004031 3.5e-13 77.8 48 79.2
HanXRQChr08g0227471 Helianthus annuus HOM05D000278 ORTHO05D004031 3.5e-13 77.8 48 79.2
Ca_04492_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004031 4.6e-13 77.4 48 83.3
COL.COLO4_13606 Corchorus olitorius HOM05D000278 ORTHO05D004031 4.6e-13 77.4 48 79.2
Thecc.05G294000 Theobroma cacao HOM05D000278 ORTHO05D004031 4.6e-13 77.4 48 79.2
Duzib106G1656 Durio zibethinus HOM05D000278 ORTHO05D004031 6.0e-13 77.0 48 77.1
Duzib177G1081 Durio zibethinus HOM05D000278 ORTHO05D004031 6.0e-13 77.0 48 77.1
Gohir.A11G296700 Gossypium hirsutum HOM05D000278 ORTHO05D004031 6.0e-13 77.0 48 79.2
Gohir.D11G310200 Gossypium hirsutum HOM05D000278 ORTHO05D004031 6.0e-13 77.0 48 79.2
Gorai.007G343600 Gossypium raimondii HOM05D000278 ORTHO05D004031 6.0e-13 77.0 48 79.2
Psat0s2522g0160 Pisum sativum HOM05D000278 ORTHO05D004031 6.0e-13 77.0 48 83.3
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 6.0e-13 77.0 48 79.2
TAR623G0935 Trochodendron aralioides HOM05D000278 ORTHO05D004031 6.0e-13 77.0 43 83.7
ECA232G4643 Erigeron canadensis HOM05D000278 ORTHO05D004031 7.9e-13 76.6 48 77.1
Lsat_1_v5_gn_5_93080 Lactuca sativa HOM05D000278 ORTHO05D004031 7.9e-13 76.6 48 77.1
FAN09G2390 Fragaria x ananassa HOM05D000278 ORTHO05D004031 1.0e-12 76.3 48 79.2
Medtr6g032870 Medicago truncatula HOM05D000278 ORTHO05D004031 1.0e-12 76.3 48 81.2
TPR.G34618 Trifolium pratense HOM05D000278 ORTHO05D004031 1.0e-12 76.3 48 81.2
SalBow1G8202 Salvia bowleyana HOM05D000278 ORTHO05D004031 1.3e-12 75.9 44 84.1
SMO353G0351 Selaginella moellendorffii HOM05D000278 ORTHO05D004031 1.3e-12 75.9 64 64.1
Aqoxy2G00582 Aquilegia oxysepala HOM05D000278 ORTHO05D004031 2.3e-12 75.1 48 77.1
Manes.09G141800 Manihot esculenta HOM05D000278 ORTHO05D004031 2.3e-12 75.1 48 79.2
Eucgr.A02095 Eucalyptus grandis HOM05D000278 ORTHO05D004031 3.0e-12 74.7 48 77.1
Zm00001eb200400 Zea mays HOM05D000278 ORTHO05D004031 3.9e-12 74.3 41 82.9
Lsat_1_v5_gn_3_59580 Lactuca sativa HOM05D000278 ORTHO05D004031 5.1e-12 73.9 44 81.8
Cc02_g37620 Coffea canephora HOM05D000278 ORTHO05D004031 1.9e-11 72.0 43 86.0
Gohir.D11G312410 Gossypium hirsutum HOM05D000278 ORTHO05D004031 1.9e-11 72.0 41 80.5
TWI34G1951 Tripterygium wilfordii HOM05D000278 ORTHO05D004031 1.9e-11 72.0 48 77.1
Lsat_1_v5_gn_3_81240 Lactuca sativa HOM05D000278 ORTHO05D032816 3.3e-11 71.2 41 80.5
Lsat_1_v5_gn_6_85040 Lactuca sativa HOM05D000278 ORTHO05D004031 4.3e-11 70.9 39 84.6
Pp3c15_13410 Physcomitrium patens HOM05D000278 ORTHO05D004031 4.3e-11 70.9 64 57.8
Pp3c15_13420 Physcomitrium patens HOM05D000278 ORTHO05D004031 4.3e-11 70.9 64 57.8
Cc02_g37670 Coffea canephora HOM05D000278 ORTHO05D004031 5.6e-11 70.5 43 83.7
Psat4g190920 Pisum sativum HOM05D000487 ORTHO05D001267 7.4e-11 70.1 43 74.4
Mapoly0052s0054 Marchantia polymorpha HOM05D000278 ORTHO05D004031 1.3e-10 69.3 64 59.4
AUR62032060 Chenopodium quinoa HOM05D000278 ORTHO05D004031 8.2e-10 66.6 36 88.9
AUR62032687 Chenopodium quinoa HOM05D000278 ORTHO05D004031 1.1e-09 66.2 36 86.1
CBR_g26488 Chara braunii HOM05D000278 ORTHO05D004031 9.0e-09 63.2 64 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3360 Anthoceros agrestis HOM05D000278 ORTHO05D004031 4.5e-08 60.8 64 54.7
Aa31sc46G30 Aethionema arabicum HOM05D000278 ORTHO05D004031 2.2e-07 58.5 37 83.8
Nn6g34503 Nelumbo nucifera HOM05D000278 ORTHO05D004031 3.8e-07 57.8 47 68.1
Hund19239 Selenicereus undatus HOM05D000278 ORTHO05D004031 3.8e-07 57.8 32 90.6
SEGI_05224 Sequoiadendron giganteum HOM05D023998 ORTHO05D032816 6.5e-07 57.0 45 64.4
Aa31sc19G80 Aethionema arabicum HOM05D000278 ORTHO05D004031 8.4e-07 56.6 37 83.8
PRCOL_00000219 Prasinoderma coloniale HOM05D000278 ORTHO05D004031 8.4e-07 56.6 62 46.8
MCO11G566 Micromonas commoda HOM05D000278 ORTHO05D004031 1.1e-06 56.2 50 56.0
SEGI_06308 Sequoiadendron giganteum HOM05D023998 ORTHO05D386053 1.9e-06 55.5 36 75.0
Lsat_1_v5_gn_3_135221 Lactuca sativa HOM05D000278 ORTHO05D004031 2.5e-06 55.1 31 83.9
Aa31sc26G80 Aethionema arabicum HOM05D000278 ORTHO05D004031 5.5e-06 53.9 65 61.5
Cre03.g168450 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004031 5.5e-06 53.9 62 48.4


User provided reference genes

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