Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-114 416.8 235 100.0
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.4e-112 409.8 236 98.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.1e-109 400.2 255 91.0
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 4.0e-104 381.7 237 93.7
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.9e-102 375.6 248 89.1
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.3e-90 335.5 235 83.0
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 4.8e-89 331.6 266 74.1
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 9.0e-88 327.4 271 72.0
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 9.0e-88 327.4 235 81.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 8.4e-86 320.9 235 80.4
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.4e-85 320.1 263 72.6
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 2.1e-73 279.6 269 62.5
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.1e-73 279.6 208 74.5
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 2.8e-73 279.3 271 62.4
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 6.3e-73 278.1 224 71.0
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 8.2e-73 277.7 270 61.9
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.1e-72 275.8 224 70.5
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.9e-72 274.6 270 61.5
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 6.9e-72 274.6 270 61.1
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 3.4e-71 272.3 270 61.1
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.4e-71 272.3 207 72.0
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 4.5e-71 271.9 207 72.9
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 7.6e-71 271.2 206 71.4
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 1.0e-70 270.8 206 71.8
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.7e-70 270.0 270 60.7
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.7e-70 270.0 270 60.0
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 5.0e-70 268.5 228 66.7
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 5.0e-70 268.5 228 66.7
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 5.0e-70 268.5 206 70.4
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 6.5e-70 268.1 270 59.6
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 1.4e-69 266.9 228 67.1
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.4e-69 266.9 236 65.3
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.9e-69 266.5 270 59.3
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.9e-69 266.5 203 72.4
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.5e-69 266.2 206 71.4
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.5e-69 266.2 270 59.3
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.5e-69 266.2 207 71.5
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 4.2e-69 265.4 228 66.2
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 4.2e-69 265.4 270 59.3
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 7.2e-69 264.6 270 58.1
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.2e-68 263.8 202 71.8
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.2e-68 263.8 270 58.9
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.2e-68 263.8 206 68.9
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.1e-68 263.1 271 58.3
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.7e-68 262.7 228 66.7
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.5e-68 262.3 270 58.5
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.5e-68 262.3 224 66.5
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 4.6e-68 261.9 222 66.7
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.6e-68 261.9 270 58.5
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 4.6e-68 261.9 270 58.1
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.1e-68 261.5 228 62.7
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.3e-67 260.4 271 58.3
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 3.9e-67 258.8 244 62.3
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 5.1e-67 258.5 195 72.8
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.1e-67 258.5 224 66.1
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 6.7e-67 258.1 194 80.9
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 6.7e-67 258.1 228 62.7
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 8.7e-67 257.7 225 64.4
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.5e-66 256.9 217 67.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.9e-66 256.5 228 63.2
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 3.3e-66 255.8 203 68.0
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 4.3e-66 255.4 224 65.2
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 5.7e-66 255.0 228 63.6
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.6e-65 253.4 228 62.7
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.8e-65 252.7 262 55.7
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.8e-65 252.7 228 63.6
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 3.7e-65 252.3 203 67.0
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 3.7e-65 252.3 224 64.7
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.8e-65 251.9 224 64.3
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-64 250.8 234 61.1
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.4e-64 250.4 247 58.3
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.8e-64 250.0 262 56.1
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 2.4e-64 249.6 247 58.3
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 2.4e-64 249.6 246 58.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 2.4e-64 249.6 247 58.3
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 5.3e-64 248.4 232 60.3
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 5.3e-64 248.4 232 60.3
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 9.0e-64 247.7 232 60.3
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 2.0e-63 246.5 246 57.3
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.4e-63 245.7 227 59.9
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.5e-63 245.4 259 57.1
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.9e-63 245.0 252 57.5
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 7.7e-63 244.6 204 65.7
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-62 243.8 232 60.8
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.3e-62 243.8 223 63.2
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 3.8e-62 242.3 259 54.4
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 5.0e-62 241.9 228 60.1
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 5.5e-61 238.4 256 55.5
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 5.5e-61 238.4 208 62.5
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 6.1e-60 235.0 195 64.1
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.4e-59 233.8 229 58.5
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.8e-59 233.4 187 73.3
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.8e-59 233.4 206 62.6
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 3.9e-59 232.3 192 65.1
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 5.1e-59 231.9 168 74.4
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.5e-58 230.3 219 60.7
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.7e-57 225.7 224 58.0
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 3.7e-57 225.7 270 54.1
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.8e-57 225.3 270 53.3
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.1e-56 224.2 270 50.7
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 1.4e-56 223.8 228 57.0
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.8e-56 223.4 270 52.6
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.1e-56 222.6 270 52.6
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.2e-55 220.7 270 50.7
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 1.1e-53 214.2 134 85.8
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.4e-53 213.8 229 55.0
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 5.5e-53 211.8 228 56.1
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.7e-52 208.8 228 54.4
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.7e-52 208.8 228 54.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 7.9e-52 208.0 270 49.6
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.0e-51 207.6 223 57.0
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.4e-51 207.2 209 58.9
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.4e-51 207.2 234 55.6
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 5.1e-51 205.3 204 57.4
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 5.1e-51 205.3 234 55.6
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.7e-49 200.3 225 52.4
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.7e-49 199.1 270 49.3
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.8e-49 198.7 270 48.9
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 5.3e-48 195.3 270 48.1
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.3e-48 195.3 172 64.5
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 5.9e-47 191.8 224 53.1
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.0e-46 191.0 319 42.3
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.3e-46 190.7 224 52.2
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.3e-46 190.7 228 52.6
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.3e-46 190.7 228 52.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.9e-46 189.5 211 55.0
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.9e-45 186.8 198 52.0
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.9e-45 186.8 270 45.9
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.1e-44 183.3 237 46.0
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 2.7e-44 183.0 206 53.4
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 6.1e-44 181.8 228 49.1
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 6.1e-44 181.8 170 61.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.8e-43 180.3 146 67.8
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.2e-43 178.7 237 45.6
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.1e-42 177.6 270 45.2
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 4.4e-42 175.6 218 50.9
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 5.7e-42 175.3 176 56.2
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.7e-42 175.3 216 51.9
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.7e-41 173.7 223 48.4
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 2.2e-41 173.3 207 52.2
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 6.3e-41 171.8 199 50.3
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 8.2e-41 171.4 195 51.3
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 3.1e-40 169.5 200 50.5
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 4.1e-40 169.1 201 48.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.7e-39 166.4 228 45.6
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.9e-38 162.9 223 46.2
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 1.5e-37 160.6 228 43.4
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.5e-37 159.8 240 42.5
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 7.2e-37 158.3 223 45.3
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 2.1e-36 156.8 223 45.7
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 3.6e-36 156.0 228 44.7
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.4e-35 154.1 168 56.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 3.0e-35 152.9 188 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.2e-33 146.7 215 41.9
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 4.7e-28 129.0 178 48.3
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 7.5e-26 121.7 235 38.7
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 9.8e-26 121.3 142 50.7
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.7e-25 120.6 166 47.6
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.8e-25 119.8 243 38.3
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 7.7e-23 111.7 203 39.4
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.1e-21 107.8 252 36.1
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.3e-21 106.3 237 35.9
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.4e-19 100.9 204 36.8
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 4.0e-19 99.4 127 53.5
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 4.0e-19 99.4 220 32.7
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 6.8e-19 98.6 245 34.7
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 6.8e-19 98.6 57 96.5
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 4.1e-16 89.4 250 31.6
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 4.1e-16 89.4 250 31.6
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 7.8e-15 85.1 91 57.1
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.9e-13 80.5 54 77.8
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.7e-09 67.4 80 47.5
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 8.3e-09 65.1 132 41.7
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 1.1e-08 64.7 125 40.8
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.1e-08 64.7 205 29.8
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 1.3e-06 57.8 245 28.6
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 8.6e-06 55.1 125 36.8


User provided reference genes

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