Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 1.1e-225 786.9 603 100.0
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 4.6e-205 718.4 614 92.2
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 4.6e-205 718.4 614 92.2
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.9e-198 696.4 615 91.1
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 1.6e-197 693.3 615 91.1
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 7.0e-177 624.8 617 84.1
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 7.0e-177 624.8 617 84.9
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 7.7e-176 621.3 613 84.7
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 1.8e-172 610.1 613 83.5
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 7.5e-171 604.7 618 82.8
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 2.2e-146 523.5 401 68.1
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 8.4e-122 441.8 358 67.0
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 5.6e-110 402.5 408 54.7
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 4.1e-84 316.6 389 46.0
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 1.8e-79 301.2 395 42.8
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 4.1e-76 290.0 380 42.9
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 9.1e-76 288.9 367 42.5
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 3.5e-75 287.0 402 43.0
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 7.7e-75 285.8 355 44.8
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 2.9e-74 283.9 360 44.4
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.1e-73 282.0 347 44.1
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 1.9e-73 281.2 328 45.1
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 3.2e-73 280.4 400 41.2
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 3.2e-73 280.4 328 45.7
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 1.2e-72 278.5 393 42.2
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 2.1e-72 277.7 385 41.8
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 3.6e-72 276.9 328 44.5
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 4.7e-72 276.6 327 45.0
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 1.8e-71 274.6 403 39.7
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 2.3e-71 274.2 394 41.6
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 2.3e-71 274.2 385 41.3
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 2.3e-71 274.2 395 40.5
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 8.8e-71 272.3 323 46.1
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 1.1e-70 271.9 385 41.3
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 1.1e-70 271.9 399 41.4
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 2.6e-70 270.8 402 40.8
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 4.4e-70 270.0 327 45.3
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 7.5e-70 269.2 351 43.3
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 3.7e-69 266.9 326 43.9
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 8.2e-69 265.8 387 41.6
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 1.4e-68 265.0 361 43.8
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 1.8e-68 264.6 362 40.6
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 7.0e-68 262.7 386 39.4
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.6e-67 261.5 327 44.3
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 7.7e-67 259.2 393 38.9
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 8.5e-66 255.8 324 43.2
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 1.1e-65 255.4 327 42.5
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 3.2e-65 253.8 398 39.9
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 2.1e-64 251.1 331 40.5
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 2.7e-64 250.8 351 40.5
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 4.0e-63 246.9 394 37.1
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 2.0e-62 244.6 321 40.2
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 2.6e-62 244.2 374 39.6
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 3.4e-62 243.8 374 39.6
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 7.5e-62 242.7 391 38.9
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 1.7e-61 241.5 364 40.9
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.2e-61 241.1 323 42.4
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 2.9e-58 230.7 360 38.1
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 2.7e-56 224.2 343 37.0
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 6.1e-56 223.0 336 38.1
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 2.3e-55 221.1 365 37.3
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 3.4e-54 217.2 356 37.6
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 3.1e-52 210.7 364 35.7
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 4.1e-52 210.3 366 34.4
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 9.5e-49 199.1 311 39.2
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 1.6e-48 198.4 200 50.0
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 2.8e-48 197.6 323 32.5
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.4e-47 195.3 347 37.2
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 5.2e-47 193.4 276 42.0
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 7.5e-46 189.5 288 36.1
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 7.5e-46 189.5 302 39.7
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 7.5e-46 189.5 270 40.7
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 2.2e-45 188.0 251 43.0
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 3.7e-45 187.2 290 38.6
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 3.7e-45 187.2 361 33.5
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 1.1e-44 185.7 239 43.5
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 1.1e-44 185.7 334 33.8
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 2.4e-44 184.5 328 32.9
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 3.5e-43 180.6 288 40.3
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 4.6e-43 180.3 342 33.6
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 3.3e-41 174.1 296 35.5
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 1.6e-40 171.8 191 48.7
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 2.1e-40 171.4 263 37.6
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 1.0e-39 169.1 191 46.6
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 8.9e-39 166.0 245 37.1
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 4.4e-38 163.7 210 41.0
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 5.8e-38 163.3 217 40.1
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 5.8e-38 163.3 209 41.1
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.3e-37 162.2 269 33.1
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 1.9e-36 158.3 178 47.8
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 1.0e-34 152.5 232 38.4
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 3.3e-33 147.5 191 44.0
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 5.6e-33 146.7 273 37.0
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 7.3e-33 146.4 271 36.5
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 2.8e-32 144.4 235 38.3
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.4e-31 142.1 261 34.5
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 6.6e-26 123.2 260 33.5
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 4.0e-23 114.0 173 35.8
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 5.2e-23 113.6 95 58.9
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 8.9e-23 112.8 140 41.4
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 4.4e-14 84.0 65 56.9


User provided reference genes

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