Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.2e-310 1068.9 524 100.0
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.2e-310 1068.9 524 100.0
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-306 1055.8 524 98.5
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.1e-306 1055.8 524 98.5
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 3.1e-306 1054.3 524 98.5
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 5.3e-306 1053.5 524 98.5
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 3.4e-297 1024.2 524 95.2
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 4.5e-297 1023.8 524 95.4
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.7e-291 1004.2 515 95.9
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.2e-289 999.2 527 92.6
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 7.4e-284 979.9 528 90.0
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 4.8e-283 977.2 525 90.9
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 9.4e-279 963.0 525 89.1
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.0e-277 959.5 524 89.1
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.0e-277 958.0 509 90.8
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.4e-274 949.1 525 88.0
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.6e-273 945.7 525 88.8
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.6e-273 945.7 525 88.8
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 4.5e-273 944.1 532 86.7
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 6.5e-272 940.3 529 87.0
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 8.5e-272 939.9 524 87.0
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 2.5e-271 938.3 523 86.8
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 2.5e-271 938.3 525 87.4
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 4.2e-271 937.6 524 87.0
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 7.2e-271 936.8 524 87.4
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 7.2e-271 936.8 524 87.4
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 2.7e-270 934.9 520 87.5
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.6e-270 934.5 524 87.2
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.8e-269 932.2 521 87.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.8e-269 932.2 521 87.7
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.0e-269 931.4 524 86.3
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 6.8e-269 930.2 524 86.5
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.5e-268 929.1 524 86.1
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.5e-268 929.1 526 86.3
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.6e-268 928.3 525 86.1
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 2.6e-268 928.3 524 86.1
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.4e-268 927.5 524 86.8
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 5.7e-268 927.2 525 85.7
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 7.5e-268 926.8 522 86.0
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 7.5e-268 926.8 509 88.0
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 9.8e-268 926.4 524 85.7
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 9.8e-268 926.4 513 87.5
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 2.8e-267 924.9 513 87.3
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.7e-267 924.5 524 85.7
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 3.7e-267 924.5 524 85.1
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.3e-267 923.7 524 85.7
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 1.4e-266 922.5 507 88.2
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.8e-266 922.2 525 85.7
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 1.8e-266 922.2 526 85.2
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 3.1e-266 921.4 524 85.5
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 4.1e-266 921.0 523 86.2
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.2e-265 919.5 527 84.8
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.6e-265 919.1 527 85.2
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.0e-265 918.7 527 84.8
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 3.5e-265 917.9 529 85.4
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 5.9e-265 917.1 524 85.1
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 7.7e-265 916.8 529 85.6
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 7.7e-265 916.8 527 84.6
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.0e-264 916.4 514 87.0
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.0e-264 916.4 524 84.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.3e-264 916.0 522 85.1
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 1.7e-264 915.6 526 83.8
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 6.5e-264 913.7 527 84.3
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 6.5e-264 913.7 527 84.3
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 8.5e-264 913.3 527 83.7
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 1.1e-263 912.9 526 84.4
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.9e-263 912.1 555 81.6
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 7.2e-263 910.2 564 80.3
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 9.4e-263 909.8 513 86.7
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.2e-262 909.4 510 86.1
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 4.7e-262 907.5 527 83.1
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.0e-261 906.4 521 84.8
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-261 906.0 521 84.5
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.8e-261 905.6 515 84.9
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.8e-261 905.6 515 84.9
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.3e-261 905.2 498 87.1
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 3.0e-261 904.8 513 85.2
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 3.0e-261 904.8 517 85.5
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 3.0e-261 904.8 521 85.6
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 4.0e-261 904.4 515 84.7
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.0e-260 902.1 524 83.2
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 4.4e-260 901.0 509 85.9
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 7.5e-260 900.2 501 85.6
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.2e-259 898.7 512 85.7
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 3.7e-259 897.9 526 82.9
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 6.3e-259 897.1 521 84.1
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 8.3e-259 896.7 525 82.7
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 8.3e-259 896.7 512 84.4
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.4e-258 896.0 521 83.9
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.4e-258 895.2 528 81.8
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 3.1e-258 894.8 533 82.2
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 4.1e-258 894.4 504 86.3
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 4.1e-258 894.4 520 84.0
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 7.0e-258 893.6 532 80.6
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.2e-257 892.9 501 85.4
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.6e-257 892.5 523 83.9
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.0e-256 887.5 548 79.6
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 4.3e-255 884.4 532 80.6
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.4e-253 879.4 522 81.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 3.4e-252 874.8 522 80.7
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 9.8e-252 873.2 524 81.3
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 7.8e-249 863.6 513 80.1
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.9e-247 859.0 520 78.1
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.3e-245 852.0 521 77.5
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.6e-244 848.6 524 83.0
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.6e-241 839.3 525 82.5
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.0e-240 836.6 528 74.1
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 3.9e-240 834.7 564 73.0
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 5.6e-239 830.9 528 77.5
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.4e-237 826.2 515 77.9
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 2.1e-233 812.4 528 72.5
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 8.4e-227 790.4 499 74.3
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 2.1e-225 785.8 412 93.2
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 2.7e-225 785.4 500 74.6
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 8.6e-224 780.4 520 69.6
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.1e-223 780.0 508 71.7
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.8e-221 772.7 501 73.1
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.8e-221 772.7 519 69.4
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.1e-221 771.9 519 69.4
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 8.9e-221 770.4 473 81.8
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.9e-216 755.0 523 67.1
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 1.2e-212 743.4 519 69.4
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 1.3e-206 723.4 524 71.8
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.4e-202 709.9 491 66.6
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.3e-198 696.8 524 69.5
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.1e-189 667.2 379 85.5
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.1e-186 657.1 529 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.4e-186 656.8 502 63.7
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.4e-178 630.2 346 89.3
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 3.2e-178 629.0 419 77.1
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 6.3e-174 614.8 344 86.6
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.9e-170 603.2 357 86.0
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 3.5e-156 555.8 500 58.8
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 6.1e-153 545.0 491 52.7
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.4e-149 533.1 356 78.1
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 3.2e-146 522.7 292 84.9
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 9.5e-146 521.2 294 85.0
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.7e-134 483.8 275 85.8
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 6.4e-134 481.9 510 50.2
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.0e-131 474.6 285 85.3
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 5.2e-128 462.2 502 48.8
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 2.4e-93 347.1 198 84.3
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 1.6e-84 317.8 409 41.1
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 8.5e-62 242.3 325 44.9
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.9e-61 241.1 398 40.5
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.3e-51 207.6 120 81.7
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 1.4e-43 181.8 93 94.6
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.7e-33 148.3 93 75.3
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 1.3e-30 138.7 79 81.0
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 9.5e-29 132.5 79 79.7
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 5.9e-23 113.2 68 73.5
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 7.8e-15 86.3 72 62.5
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.2e-12 79.0 125 40.8
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 9.8e-10 69.3 48 62.5
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.3e-06 58.9 35 74.3


User provided reference genes

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