Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 2.8e-129 465.3 241 100.0
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 1.0e-110 403.7 244 88.5
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.7e-110 402.9 244 88.5
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.7e-110 402.9 244 88.5
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 1.5e-109 399.8 243 87.7
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 6.1e-108 394.4 246 86.2
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 2.7e-87 325.9 250 70.8
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 7.8e-87 324.3 250 70.8
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.8e-83 313.2 257 66.9
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 9.9e-82 307.4 248 67.3
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.7e-81 306.6 252 66.3
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.3e-73 280.4 259 59.5
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 1.7e-73 280.0 256 60.5
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.7e-73 280.0 259 59.8
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 6.4e-73 278.1 252 61.1
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 6.4e-73 278.1 252 61.1
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.9e-72 276.6 249 60.2
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.9e-72 276.6 256 59.0
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 4.2e-72 275.4 259 59.1
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 9.3e-72 274.2 258 59.7
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.2e-71 273.9 258 58.5
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 8.7e-70 267.7 258 58.9
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 9.3e-64 247.7 259 56.8
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 1.5e-58 230.3 251 52.2
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 2.6e-58 229.6 247 52.6
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 5.8e-58 228.4 249 52.6
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.8e-58 228.4 252 52.0
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.3e-57 227.3 252 51.6
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 3.8e-57 225.7 252 51.2
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 4.9e-57 225.3 250 52.0
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.4e-57 224.9 252 50.8
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.4e-56 223.8 253 51.0
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.9e-56 223.4 252 51.2
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 2.4e-56 223.0 252 50.4
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 1.2e-55 220.7 252 51.2
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 1.2e-55 220.7 240 51.7
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.6e-55 220.3 252 51.2
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 2.1e-55 219.9 249 49.4
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 2.1e-55 219.9 249 49.4
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 2.7e-55 219.5 253 50.2
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.0e-54 217.6 253 48.6
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.3e-54 217.2 258 51.2
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 2.3e-54 216.5 252 50.0
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 2.3e-54 216.5 245 48.6
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 3.0e-54 216.1 256 51.2
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 5.1e-54 215.3 249 50.6
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 8.7e-54 214.5 250 49.6
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 8.7e-54 214.5 252 50.0
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.5e-53 213.8 257 50.2
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 1.9e-53 213.4 257 48.6
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.5e-53 213.0 245 48.6
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 2.5e-53 213.0 255 49.0
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 2.5e-53 213.0 238 50.8
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 2.5e-53 213.0 256 48.4
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 3.3e-53 212.6 250 49.2
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 1.3e-52 210.7 249 49.4
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 1.6e-52 210.3 237 51.1
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.1e-52 209.9 256 49.2
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 4.8e-52 208.8 254 48.8
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 4.8e-52 208.8 251 47.8
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 6.2e-52 208.4 241 49.4
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 6.2e-52 208.4 248 48.8
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 6.2e-52 208.4 246 49.2
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 6.2e-52 208.4 240 47.9
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 1.1e-51 207.6 251 47.8
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 4.0e-51 205.7 246 48.0
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 5.3e-51 205.3 245 46.9
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 5.3e-51 205.3 249 47.4
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 6.9e-51 204.9 248 47.6
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 6.9e-51 204.9 255 49.0
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 1.5e-50 203.8 239 48.5
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 2.0e-50 203.4 253 46.2
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.0e-50 203.4 240 49.6
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 2.0e-50 203.4 254 46.9
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 2.6e-50 203.0 253 45.8
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 5.8e-50 201.8 245 48.6
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.0e-49 201.1 253 45.5
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 1.3e-49 200.7 239 49.4
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 1.7e-49 200.3 249 48.6
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.7e-49 200.3 251 47.4
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 2.2e-49 199.9 252 47.6
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 2.2e-49 199.9 247 47.0
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 2.2e-49 199.9 252 48.0
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 4.9e-49 198.7 256 47.7
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.5e-48 196.4 243 47.7
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 3.2e-48 196.1 241 47.3
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 4.2e-48 195.7 250 48.0
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 4.2e-48 195.7 243 47.3
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 4.2e-48 195.7 240 47.9
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 4.2e-48 195.7 237 46.0
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 5.5e-48 195.3 237 46.0
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 9.3e-48 194.5 255 46.3
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 1.2e-47 194.1 252 45.2
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.6e-47 193.7 225 50.7
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 1.8e-46 190.3 250 46.4
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 1.8e-46 190.3 250 46.4
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 3.9e-46 189.1 258 45.7
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 3.9e-46 189.1 245 45.3
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 8.7e-46 188.0 236 47.0
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 1.1e-45 187.6 239 44.4
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 1.9e-45 186.8 242 46.3
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 3.3e-45 186.0 247 44.1
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 5.7e-45 185.3 244 46.7
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.4e-43 180.6 183 53.0
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 5.3e-43 178.7 122 75.4
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 6.9e-43 178.3 239 45.6
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 5.9e-42 175.3 239 44.4
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 7.6e-42 174.9 244 41.8
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 1.7e-41 173.7 233 45.1
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 1.7e-41 173.7 259 42.5
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 3.2e-40 169.5 253 41.5
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.7e-33 147.1 191 46.1
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 7.2e-32 141.7 170 46.5
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.4e-30 137.5 185 43.2
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 4.4e-29 132.5 122 57.4
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 3.8e-17 92.8 122 46.7
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 6.5e-17 92.0 180 33.9
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 3.2e-16 89.7 129 42.6
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 7.2e-16 88.6 142 40.1
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 1.4e-14 84.3 176 33.0
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 9.7e-13 78.2 133 37.6
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 1.3e-12 77.8 127 40.9
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 3.1e-11 73.2 79 50.6
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 1.6e-10 70.9 98 41.8
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 3.5e-10 69.7 114 39.5
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 7.7e-10 68.6 76 50.0
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 1.9e-08 63.9 84 39.3
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 2.7e-07 60.1 51 52.9


User provided reference genes

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