Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 4.8e-307 1057.0 525 100.0
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 2.5e-287 991.5 522 94.6
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 2.7e-278 961.4 526 90.1
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 3.6e-278 961.1 526 90.1
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 3.0e-277 958.0 526 89.5
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 1.5e-276 955.7 526 89.7
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 8.3e-275 949.9 526 89.4
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 1.6e-262 909.1 529 86.8
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 4.3e-255 884.4 528 84.7
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 3.3e-239 831.6 524 80.5
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 1.1e-237 826.6 526 79.7
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 1.3e-200 703.4 538 67.7
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 5.5e-194 681.4 547 65.1
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 1.1e-181 640.6 374 83.4
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 3.2e-162 575.9 380 75.5
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 7.5e-143 511.5 511 52.4
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 2.9e-142 509.6 555 50.1
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 1.9e-138 496.9 519 51.1
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 5.6e-138 495.4 533 50.5
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 2.1e-137 493.4 537 51.0
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 2.1e-137 493.4 549 48.3
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 6.8e-136 488.4 569 47.6
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.2e-135 487.6 525 51.4
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 4.9e-134 482.3 506 51.0
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.2e-132 477.6 531 50.1
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 2.7e-132 476.5 505 50.9
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 3.3e-130 469.5 548 48.4
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 2.3e-128 463.4 503 50.3
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 4.0e-128 462.6 533 47.5
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 8.9e-128 461.5 545 47.2
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 2.9e-126 456.4 545 45.7
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 7.1e-125 451.8 559 45.4
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 4.6e-124 449.1 553 46.3
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 3.0e-123 446.4 557 45.1
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 6.6e-123 445.3 535 47.7
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 1.1e-122 444.5 475 50.9
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 6.2e-121 438.7 548 45.8
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 1.1e-120 438.0 553 44.1
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 1.8e-120 437.2 517 45.8
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 3.1e-120 436.4 510 46.1
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 6.8e-120 435.3 548 44.5
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 2.6e-119 433.3 565 44.1
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 9.9e-119 431.4 537 43.8
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 2.9e-118 429.9 542 44.8
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 6.4e-118 428.7 517 44.3
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 5.4e-117 425.6 548 44.3
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 7.1e-117 425.2 530 43.0
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 3.9e-115 419.5 427 50.1
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 3.3e-114 416.4 580 41.6
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 1.6e-113 414.1 531 45.0
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.8e-113 413.3 481 49.1
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 3.6e-113 412.9 508 46.1
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.1e-112 411.4 519 43.5
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 3.1e-112 409.8 521 44.5
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 3.1e-112 409.8 589 40.1
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 4.0e-112 409.5 519 43.2
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 6.9e-112 408.7 503 44.3
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 1.2e-111 407.9 525 41.9
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 5.8e-111 405.6 611 40.4
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 7.6e-111 405.2 538 42.2
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 9.3e-109 398.3 434 47.5
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 3.9e-107 392.9 474 45.6
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 1.9e-106 390.6 412 50.7
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 4.8e-105 386.0 495 47.9
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 1.8e-104 384.0 503 45.3
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 1.7e-102 377.5 619 37.3
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 1.6e-100 370.9 574 38.7
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 4.6e-100 369.4 704 35.5
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 2.3e-99 367.1 459 44.2
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 5.1e-99 365.9 446 44.2
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 1.9e-98 364.0 393 47.3
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 3.3e-98 363.2 478 45.0
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 7.4e-98 362.1 469 43.7
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 2.8e-97 360.1 513 40.5
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 9.0e-96 355.1 421 45.1
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 1.5e-95 354.4 424 44.8
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 1.5e-95 354.4 429 46.6
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 2.6e-95 353.6 425 44.2
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 8.4e-94 348.6 393 47.6
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 7.1e-93 345.5 512 41.0
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 6.0e-92 342.4 413 43.8
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 3.0e-91 340.1 538 37.0
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 5.6e-90 335.9 501 39.9
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 7.4e-90 335.5 394 45.9
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 2.8e-89 333.6 360 48.1
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 3.7e-89 333.2 522 39.1
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 8.1e-89 332.0 383 48.8
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 3.8e-86 323.2 403 44.9
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.2e-85 319.7 442 41.9
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 2.8e-81 307.0 399 44.1
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 6.5e-78 295.8 391 40.2
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 1.0e-70 271.9 362 40.1
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 3.6e-60 236.9 310 42.9
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.8e-59 234.6 285 46.3
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 3.1e-56 223.8 332 37.0
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 3.6e-52 210.3 501 29.9
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 6.7e-51 206.1 232 47.8
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 6.7e-51 206.1 221 48.9
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 6.3e-49 199.5 538 27.1
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 1.0e-38 165.6 223 40.4
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 2.1e-36 157.9 278 37.4
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 3.5e-31 140.6 380 28.4
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 1.9e-29 134.8 202 37.6
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 6.8e-27 126.3 224 30.8
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 7.0e-24 116.3 208 30.8
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.2e-15 89.0 161 36.6
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 3.9e-14 84.0 170 33.5
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 9.9e-10 69.3 152 32.9
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 6.4e-09 66.6 95 35.8
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 8.3e-09 66.2 101 34.7
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 4.1e-08 63.9 69 44.9


User provided reference genes

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