Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 6.2e-219 763.8 388 100.0
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 1.1e-170 603.6 347 90.8
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 9.1e-170 600.5 347 90.5
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 1.9e-167 592.8 348 89.1
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 1.9e-167 592.8 348 89.1
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 8.0e-166 587.4 348 89.4
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 2.0e-140 503.1 351 75.8
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 6.4e-131 471.5 352 72.2
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 4.6e-129 465.3 351 71.8
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 1.0e-128 464.2 352 71.9
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 3.8e-107 392.5 348 62.4
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 1.3e-102 377.5 326 63.5
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 1.8e-101 373.6 339 60.2
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 8.4e-99 364.8 342 58.5
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 1.4e-98 364.0 343 58.3
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 3.2e-98 362.8 343 58.3
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 5.4e-98 362.1 340 58.8
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 9.3e-98 361.3 327 61.8
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 6.0e-97 358.6 340 58.2
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 2.3e-96 356.7 342 59.4
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 2.3e-96 356.7 339 59.0
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 3.0e-96 356.3 339 57.8
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.1e-95 354.4 340 56.8
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 1.1e-95 354.4 340 56.8
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 2.5e-95 353.2 343 58.6
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 2.5e-95 353.2 343 57.1
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.3e-95 352.8 298 63.8
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 3.3e-95 352.8 342 57.0
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 4.3e-95 352.4 347 58.2
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 5.6e-95 352.1 339 58.7
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 7.3e-95 351.7 339 56.9
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 1.6e-94 350.5 343 57.1
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 1.4e-93 347.4 343 56.9
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 2.4e-93 346.7 339 58.1
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 3.1e-93 346.3 339 56.0
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 4.0e-93 345.9 349 56.4
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 6.9e-93 345.1 340 56.8
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 1.2e-92 344.4 346 55.5
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 2.6e-92 343.2 340 54.1
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 5.8e-92 342.0 339 56.3
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 5.8e-92 342.0 339 55.5
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 7.6e-92 341.7 342 57.6
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 7.6e-92 341.7 353 53.3
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 1.7e-91 340.5 343 56.0
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 2.2e-91 340.1 340 55.9
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 2.2e-91 340.1 343 56.9
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 2.9e-91 339.7 335 57.6
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 3.8e-91 339.3 339 56.6
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 4.9e-91 339.0 345 54.2
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 8.4e-91 338.2 339 56.0
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 1.1e-90 337.8 344 54.1
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 4.2e-90 335.9 348 53.4
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 4.2e-90 335.9 345 53.9
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 1.6e-89 334.0 351 54.7
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 3.5e-89 332.8 339 53.4
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 6.0e-89 332.0 339 53.7
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 7.9e-89 331.6 344 54.7
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 1.8e-88 330.5 336 54.5
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 2.3e-88 330.1 345 53.3
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 3.9e-88 329.3 357 52.9
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 6.7e-88 328.6 345 53.0
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 6.7e-88 328.6 335 53.1
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 1.5e-87 327.4 345 53.3
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 4.3e-87 325.9 337 54.0
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 1.3e-86 324.3 344 52.9
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 3.7e-86 322.8 337 54.3
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.8e-86 322.4 336 53.3
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 6.2e-86 322.0 345 53.3
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 1.1e-85 321.2 339 53.1
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 1.4e-85 320.9 343 53.6
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 2.4e-85 320.1 336 53.0
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 5.3e-85 318.9 336 53.0
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 1.0e-83 314.7 337 54.6
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 3.8e-83 312.8 337 51.6
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 4.9e-83 312.4 342 52.9
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 2.5e-82 310.1 354 51.4
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 5.5e-82 308.9 352 50.0
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 7.1e-82 308.5 346 50.9
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 3.5e-81 306.2 345 51.6
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 3.5e-81 306.2 345 51.6
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 6.0e-81 305.4 337 51.0
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 7.9e-81 305.1 353 50.7
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 3.3e-79 299.7 346 49.7
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 1.3e-78 297.7 326 51.2
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 1.6e-78 297.4 336 54.8
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 3.7e-78 296.2 340 51.8
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 3.7e-78 296.2 344 50.3
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 1.7e-75 287.3 315 52.7
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 1.7e-75 287.3 337 49.0
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 2.5e-74 283.5 301 54.8
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 2.5e-74 283.5 337 48.1
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 2.5e-74 283.5 343 50.7
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 4.2e-74 282.7 348 50.6
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.5e-71 273.5 233 62.2
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 6.3e-70 268.9 379 44.1
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 8.2e-70 268.5 337 49.9
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 1.8e-61 240.7 193 67.9
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 3.6e-57 226.5 270 48.5
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.8e-56 221.9 358 39.7
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.2e-51 207.2 149 75.8
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 6.5e-43 179.1 336 39.3
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 3.2e-42 176.8 376 34.3
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 8.0e-41 172.2 368 32.1
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.5e-39 167.9 166 51.8
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 4.8e-38 162.9 372 34.1
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 4.1e-37 159.8 192 51.6
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 8.5e-35 152.1 135 62.2
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 1.3e-30 138.3 361 31.3
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.9e-26 124.4 180 44.4
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 3.2e-21 107.1 417 25.9
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 5.6e-18 96.3 84 61.9
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.6e-12 78.2 69 60.9
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 1.2e-09 68.6 49 65.3
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 4.0e-08 63.5 144 34.7
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 4.9e-06 56.6 36 72.2
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 4.9e-06 56.6 36 72.2
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 4.9e-06 56.6 51 58.8
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 6.4e-06 56.2 236 25.0


User provided reference genes

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