Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 1.5e-115 419.5 209 100.0
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 2.7e-104 382.1 206 93.2
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 3.6e-104 381.7 201 95.0
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 1.4e-103 379.8 197 94.9
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 3.9e-103 378.3 189 98.4
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 6.7e-103 377.5 189 98.4
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 4.4e-102 374.8 189 97.4
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 4.8e-101 371.3 191 94.8
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 6.5e-98 360.9 205 88.3
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 6.3e-93 344.4 192 86.5
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 6.3e-93 344.4 192 85.9
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 8.3e-93 344.0 186 87.6
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 8.3e-93 344.0 186 87.6
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 1.1e-92 343.6 186 87.1
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 1.4e-92 343.2 192 85.9
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 1.4e-92 343.2 203 81.8
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.8e-92 342.8 191 85.9
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 7.0e-92 340.9 192 84.9
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 1.6e-91 339.7 186 84.9
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 2.0e-91 339.3 192 84.9
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 2.7e-91 339.0 186 84.9
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 4.5e-91 338.2 192 83.9
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 1.0e-90 337.0 186 93.0
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 2.2e-90 335.9 191 83.8
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 5.0e-90 334.7 207 80.2
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 8.5e-90 334.0 191 82.7
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.1e-89 333.6 188 81.4
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.1e-89 333.6 188 81.4
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 1.1e-89 333.6 188 81.4
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 1.5e-89 333.2 191 82.2
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.9e-89 332.8 191 80.6
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 3.2e-89 332.0 191 81.7
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 4.2e-89 331.6 188 81.9
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.2e-88 330.1 191 79.6
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.8e-87 326.2 200 77.5
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 1.8e-87 326.2 186 80.1
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.8e-87 326.2 191 80.6
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 2.3e-87 325.9 201 77.6
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 3.0e-87 325.5 191 79.6
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 4.0e-87 325.1 191 79.6
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 4.0e-87 325.1 191 80.1
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 6.8e-87 324.3 191 79.1
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 1.5e-86 323.2 191 79.6
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 1.5e-86 323.2 191 79.1
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 2.0e-86 322.8 191 78.5
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 2.6e-86 322.4 191 79.1
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 4.4e-86 321.6 206 74.8
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 4.4e-86 321.6 206 74.8
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 7.5e-86 320.9 191 78.5
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 9.8e-86 320.5 191 77.0
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 1.7e-85 319.7 191 77.5
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 2.8e-85 318.9 191 78.5
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 4.8e-85 318.2 191 77.5
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 6.3e-85 317.8 190 79.5
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 8.3e-85 317.4 191 78.0
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 1.1e-84 317.0 188 76.6
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.1e-84 317.0 191 76.4
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 1.1e-84 317.0 203 75.4
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 1.8e-84 316.2 205 73.2
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 1.8e-84 316.2 188 78.2
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 3.1e-84 315.5 192 77.6
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 4.1e-84 315.1 190 77.4
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 4.1e-84 315.1 209 73.7
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 7.0e-84 314.3 191 75.4
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 1.6e-83 313.2 191 77.0
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 2.7e-83 312.4 191 77.0
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 2.7e-83 312.4 191 75.9
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 1.7e-82 309.7 202 71.3
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 2.3e-82 309.3 191 76.4
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 2.3e-82 309.3 191 74.3
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 2.9e-82 308.9 205 69.8
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 2.9e-82 308.9 207 71.5
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 3.8e-82 308.5 192 75.5
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 3.8e-82 308.5 192 75.5
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 5.0e-82 308.1 188 77.1
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 6.6e-82 307.8 191 74.9
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 8.6e-82 307.4 191 75.9
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 1.1e-81 307.0 191 74.9
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 1.5e-81 306.6 192 77.1
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 1.5e-81 306.6 189 74.6
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 1.9e-81 306.2 189 74.1
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 2.5e-81 305.8 191 74.9
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 3.3e-81 305.4 188 73.9
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 5.5e-81 304.7 188 74.5
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 5.5e-81 304.7 188 73.4
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 5.5e-81 304.7 191 74.3
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 5.5e-81 304.7 191 74.3
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 7.2e-81 304.3 191 74.9
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 9.5e-81 303.9 194 74.2
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 9.5e-81 303.9 191 73.8
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.2e-80 303.5 191 74.3
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 1.6e-80 303.1 193 75.1
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.6e-80 303.1 193 75.1
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 4.7e-80 301.6 217 66.4
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 4.7e-80 301.6 193 74.6
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 5.2e-79 298.1 190 74.7
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.5e-78 296.6 201 70.1
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 2.6e-78 295.8 152 93.4
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 3.4e-78 295.4 193 72.0
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 7.5e-78 294.3 170 78.2
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 4.9e-77 291.6 214 66.4
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.1e-76 290.4 211 68.2
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 1.4e-76 290.0 202 68.3
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.1e-76 288.9 219 64.4
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 9.2e-76 287.3 189 73.0
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.3e-74 283.5 188 70.2
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 2.3e-74 282.7 183 71.0
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 9.5e-73 277.3 188 66.0
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 2.1e-72 276.2 187 67.4
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 6.8e-71 271.2 169 75.7
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 4.4e-70 268.5 149 83.2
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 3.7e-69 265.4 163 75.5
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 4.9e-69 265.0 183 63.4
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 8.3e-69 264.2 166 72.3
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 3.2e-68 262.3 188 66.5
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 9.2e-68 260.8 253 54.9
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 1.2e-67 260.4 150 80.0
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 9.5e-65 250.8 187 58.3
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 4.6e-59 231.9 305 43.3
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 2.3e-58 229.6 184 57.6
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 8.9e-55 217.6 133 73.7
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 2.9e-53 212.6 184 55.4
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 4.9e-45 185.3 129 62.0
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 1.3e-40 170.6 104 74.0
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 1.4e-39 167.2 104 74.0
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 9.3e-36 154.5 90 80.0
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 4.8e-24 115.5 64 79.7
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 6.9e-23 111.7 167 40.1
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 1.8e-18 97.1 183 25.1
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 3.0e-18 96.3 184 28.8
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 3.9e-18 95.9 63 68.3
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 5.1e-18 95.5 182 26.9
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 1.1e-17 94.4 183 23.5
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 5.7e-17 92.0 189 25.9
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 5.7e-17 92.0 181 28.7
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 2.8e-16 89.7 163 27.6
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 2.8e-16 89.7 182 25.3
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 2.8e-16 89.7 182 29.1
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 3.7e-16 89.4 181 28.2
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 4.8e-16 89.0 181 28.2
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 8.2e-16 88.2 178 24.7
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 1.1e-15 87.8 200 27.0
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 2.4e-15 86.7 180 27.2
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.4e-15 86.7 185 23.8
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 3.1e-15 86.3 186 26.3
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 1.5e-14 84.0 186 25.8
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 3.4e-14 82.8 163 28.2
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 3.4e-14 82.8 185 26.5
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 5.8e-14 82.0 185 23.8
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 7.6e-14 81.6 182 24.7
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 2.2e-13 80.1 180 25.0
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 2.9e-13 79.7 180 25.0
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.9e-13 79.7 166 24.7
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 3.8e-13 79.3 180 25.0
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 3.8e-13 79.3 180 25.0
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 3.8e-13 79.3 166 24.7
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 3.8e-13 79.3 181 28.2
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 5.0e-13 79.0 180 25.6
Migut.D02561 Erythranthe guttata HOM05D007418 ORTHO05D009419 5.0e-13 79.0 184 24.5
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 5.0e-13 79.0 180 26.1
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 6.5e-13 78.6 193 26.4
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 6.5e-13 78.6 193 26.4
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 6.5e-13 78.6 179 25.1
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 1.4e-12 77.4 180 25.6
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.5e-12 76.6 203 24.6
Cre06.g263050 Chlamydomonas reinhardtii HOM05D007418 ORTHO05D009419 3.2e-12 76.3 210 26.2
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 3.2e-12 76.3 203 24.6
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 4.2e-12 75.9 191 26.2
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 4.2e-12 75.9 191 26.2
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 4.2e-12 75.9 184 24.5
arahy.Tifrunner.gnm1.ann1.ZH41ZF Arachis hypogaea HOM05D007418 ORTHO05D009419 5.5e-12 75.5 187 25.1
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 5.5e-12 75.5 186 24.7
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 1.2e-11 74.3 185 23.2
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 2.1e-11 73.6 183 23.5
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 2.7e-11 73.2 180 24.4
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 1.3e-10 70.9 180 25.0
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.3e-10 70.9 184 23.4
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 3.0e-10 69.7 164 25.6
Cfa019012 Carpinus fangiana HOM05D000059 ORTHO05D000528 3.9e-10 69.3 188 22.9
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 3.9e-10 69.3 41 73.2
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 6.7e-10 68.6 192 26.0
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.3e-08 64.3 40 72.5
arahy.Tifrunner.gnm1.ann1.WR82LC Arachis hypogaea HOM05D007418 ORTHO05D009419 2.2e-08 63.5 212 23.1
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 3.7e-08 62.8 131 25.2
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 3.1e-07 59.7 178 25.3


User provided reference genes

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