Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 1.3e-45 186.0 93 100.0
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 4.3e-41 171.0 93 91.4
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 1.6e-40 169.1 93 90.3
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.6e-40 169.1 93 90.3
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 3.6e-40 167.9 93 88.2
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 6.2e-40 167.2 93 88.2
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 1.8e-39 165.6 93 87.1
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 1.8e-39 165.6 93 88.2
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 2.3e-39 165.2 93 87.1
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 4.0e-39 164.5 93 87.1
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 5.2e-39 164.1 93 84.9
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 2.0e-38 162.2 93 89.2
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 3.4e-38 161.4 93 84.9
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 5.8e-38 160.6 93 88.2
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 7.0e-36 153.7 94 84.0
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 2.3e-34 148.7 93 77.4
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.1e-33 146.4 93 76.3
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.9e-33 145.6 93 75.3
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 3.3e-33 144.8 93 73.1
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 7.3e-33 143.7 93 76.3
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 1.6e-32 142.5 93 72.0
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 2.1e-32 142.1 93 74.2
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 2.1e-32 142.1 93 74.2
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 2.1e-32 142.1 92 70.7
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 2.1e-32 142.1 93 74.2
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 2.1e-32 142.1 93 74.2
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 2.1e-32 142.1 93 75.3
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 2.1e-32 142.1 93 73.1
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 2.1e-32 142.1 93 73.1
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 2.8e-32 141.7 93 73.1
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 2.8e-32 141.7 93 73.1
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 2.8e-32 141.7 93 73.1
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 3.6e-32 141.4 77 88.3
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 3.6e-32 141.4 92 73.9
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.7e-32 141.0 93 73.1
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.7e-32 141.0 93 73.1
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 4.7e-32 141.0 93 72.0
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 4.7e-32 141.0 93 69.9
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 8.1e-32 140.2 93 72.0
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 1.1e-31 139.8 93 73.1
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 1.1e-31 139.8 93 72.0
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.8e-31 139.0 90 74.4
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 1.8e-31 139.0 93 71.0
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 1.8e-31 139.0 93 72.0
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 2.3e-31 138.7 92 68.5
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 3.1e-31 138.3 93 71.0
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 3.1e-31 138.3 93 72.0
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 3.1e-31 138.3 93 72.0
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 4.0e-31 137.9 93 72.0
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 4.0e-31 137.9 93 72.0
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 4.0e-31 137.9 93 71.0
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 4.0e-31 137.9 92 70.7
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 4.0e-31 137.9 93 69.9
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 5.2e-31 137.5 93 74.2
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 6.8e-31 137.1 93 67.7
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 6.8e-31 137.1 93 71.0
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 6.8e-31 137.1 93 69.9
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 8.9e-31 136.7 93 69.9
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 8.9e-31 136.7 93 69.9
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 8.9e-31 136.7 93 72.0
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 8.9e-31 136.7 93 69.9
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 1.2e-30 136.3 93 68.8
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 2.6e-30 135.2 93 68.8
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 3.4e-30 134.8 92 66.3
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 3.4e-30 134.8 93 68.8
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 4.4e-30 134.4 93 69.9
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 4.4e-30 134.4 93 71.0
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 5.8e-30 134.0 93 68.8
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 7.5e-30 133.7 93 68.8
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 7.5e-30 133.7 93 68.8
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 7.5e-30 133.7 92 68.5
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 9.8e-30 133.3 93 69.9
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 9.8e-30 133.3 93 69.9
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 9.8e-30 133.3 94 67.0
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 1.3e-29 132.9 93 68.8
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.3e-29 132.9 91 68.1
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 1.7e-29 132.5 93 67.7
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 1.7e-29 132.5 93 68.8
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 1.7e-29 132.5 93 66.7
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 1.7e-29 132.5 92 70.7
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 2.2e-29 132.1 93 68.8
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 2.9e-29 131.7 93 67.7
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 2.9e-29 131.7 90 68.9
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.9e-29 131.7 93 68.8
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 3.7e-29 131.3 93 66.7
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 4.9e-29 131.0 92 67.4
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 6.4e-29 130.6 93 67.7
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 6.4e-29 130.6 93 66.7
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 8.3e-29 130.2 93 66.7
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 8.3e-29 130.2 93 68.8
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 8.3e-29 130.2 92 66.3
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 1.2e-27 126.3 92 64.1
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 1.2e-27 126.3 93 65.6
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 1.6e-27 125.9 89 68.5
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 1.6e-27 125.9 93 64.5
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 2.7e-27 125.2 91 67.0
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 4.6e-27 124.4 93 63.4
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 2.3e-26 122.1 90 65.6
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 3.9e-26 121.3 93 63.4
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 3.3e-25 118.2 89 65.2
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 5.6e-25 117.5 91 62.6
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 5.6e-25 117.5 90 62.2
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 2.1e-24 115.5 93 62.4
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 2.1e-24 115.5 93 62.4
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 8.1e-24 113.6 85 63.5
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.8e-23 112.5 88 62.5
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.2e-22 109.8 80 62.5
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.2e-22 109.8 80 62.5
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 2.0e-22 109.0 89 60.7
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 1.7e-21 105.9 90 57.8
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 6.4e-21 104.0 88 58.0
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 1.2e-19 99.8 88 55.7
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 7.3e-17 90.5 53 86.8
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 7.6e-14 80.5 93 43.0
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 5.1e-10 67.8 59 54.2
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 1.5e-06 56.2 37 73.0


User provided reference genes

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