Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 0.0e+00 1444.1 724 100.0
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 0.0e+00 1235.3 798 81.7
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 0.0e+00 1230.3 822 79.9
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 0.0e+00 1225.7 805 80.0
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 0.0e+00 1214.1 796 80.4
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 0.0e+00 1213.4 796 80.2
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 0.0e+00 1144.4 798 76.4
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 0.0e+00 1112.8 806 74.3
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 0.0e+00 1095.5 811 71.4
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 8.6e-307 1056.6 695 80.6
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 2.2e-270 935.6 719 72.7
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 6.5e-254 880.9 490 91.0
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 7.2e-253 877.5 752 64.4
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 9.4e-253 877.1 628 74.2
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 5.0e-222 775.0 828 54.0
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 6.1e-220 768.1 591 70.1
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 1.0e-214 750.7 806 51.2
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 3.3e-205 719.2 775 51.0
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 3.2e-200 702.6 792 50.3
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.0e-198 697.6 799 49.2
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 5.6e-197 691.8 740 51.4
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 2.1e-196 689.9 751 51.0
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 1.1e-195 687.6 776 49.6
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 4.1e-192 675.6 808 48.3
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 2.7e-191 672.9 799 48.1
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 3.9e-190 669.1 766 49.5
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 1.1e-189 667.5 772 48.2
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.8e-188 662.9 769 47.6
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 1.2e-186 657.5 763 48.1
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.4e-184 649.8 760 47.1
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 4.6e-183 645.6 744 49.1
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 5.1e-182 642.1 816 46.3
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.1e-181 641.0 813 46.5
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 5.8e-178 628.6 810 45.8
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 7.1e-176 621.7 740 47.2
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 2.1e-175 620.2 753 47.5
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 6.0e-175 618.6 763 46.5
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.9e-173 613.6 775 45.0
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 5.6e-173 612.1 747 47.0
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 7.3e-173 611.7 779 45.7
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 7.3e-173 611.7 779 45.7
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 1.6e-172 610.5 770 45.1
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 2.6e-170 603.2 879 41.6
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 5.8e-170 602.1 777 44.9
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 5.8e-170 602.1 806 44.2
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 9.9e-170 601.3 754 45.4
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.4e-168 597.4 757 44.1
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 2.7e-167 593.2 814 45.3
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 6.0e-167 592.0 837 43.1
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 7.9e-167 591.7 777 44.3
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 2.3e-166 590.1 737 45.7
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 9.6e-165 584.7 748 45.5
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 1.6e-164 583.9 757 44.3
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 4.8e-164 582.4 745 45.0
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 1.1e-163 581.3 763 44.8
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 2.4e-163 580.1 780 44.0
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 2.0e-162 577.0 767 43.8
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 2.2e-161 573.5 752 45.6
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 3.8e-161 572.8 770 44.4
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.1e-160 571.2 587 52.6
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 1.2e-159 567.8 810 42.0
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 2.7e-159 566.6 760 43.4
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 1.8e-158 563.9 732 45.1
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 4.3e-157 559.3 779 42.7
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 5.7e-157 558.9 757 43.1
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 7.4e-157 558.5 740 43.6
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.3e-156 557.8 771 44.6
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 2.1e-156 557.0 613 50.6
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 3.1e-155 553.1 757 45.2
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 2.9e-153 546.6 756 42.6
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 2.9e-153 546.6 794 41.6
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 2.9e-153 546.6 818 43.0
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 3.8e-153 546.2 739 42.4
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 5.5e-152 542.3 789 41.8
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 2.7e-151 540.0 750 43.9
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 3.9e-150 536.2 783 43.0
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 1.6e-148 530.8 735 41.9
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 1.5e-146 524.2 756 42.1
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 5.9e-146 522.3 702 43.3
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 2.9e-145 520.0 781 40.3
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.4e-144 517.7 846 39.6
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.4e-144 517.7 828 38.6
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 2.1e-143 513.8 706 42.8
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 5.1e-142 509.2 786 39.7
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 9.7e-141 505.0 797 39.8
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 9.1e-139 498.4 873 36.3
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 3.4e-138 496.5 764 40.4
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 5.5e-136 489.2 564 50.0
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.4e-134 484.6 814 39.2
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 2.3e-134 483.8 754 37.8
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 4.8e-132 476.1 792 38.9
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.8e-123 447.6 612 44.8
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 1.0e-121 441.8 540 45.2
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 1.2e-119 434.9 551 44.3
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 2.7e-119 433.7 611 41.9
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 1.5e-117 427.9 540 43.5
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 2.3e-105 387.5 770 33.4
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.0e-94 352.1 594 38.6
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 2.0e-69 268.1 248 63.7
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 3.5e-66 257.3 468 37.6
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 9.6e-64 249.2 336 43.5
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 1.1e-62 245.7 333 42.6
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 4.3e-56 223.8 214 53.3
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 2.9e-44 184.5 558 26.9
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 1.1e-43 182.6 97 93.8
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 1.2e-34 152.5 651 22.1
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 6.7e-33 146.7 608 22.5
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 8.7e-33 146.4 569 23.7
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 1.1e-32 146.0 443 26.2
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 1.3e-31 142.5 371 30.7
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 3.8e-28 131.0 149 47.7
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.6e-26 125.6 148 49.3
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 1.4e-25 122.5 146 46.6
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 1.4e-22 112.5 58 100.0
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 1.8e-22 112.1 215 34.0
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 1.8e-22 112.1 215 34.0
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.5e-21 109.0 124 48.4
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.5e-21 109.0 124 48.4
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-18 99.4 81 66.7
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 8.8e-17 93.2 97 43.3
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 4.1e-14 84.3 117 41.9
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 5.3e-14 84.0 105 43.8
AagrBONN_evm.TU.Sc2ySwM_228.4557 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-06 58.5 511 22.3
Lsat_1_v5_gn_4_134881 Lactuca sativa HOM05D005833 ORTHO05D011576 3.1e-06 58.2 58 41.4
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 3.1e-06 58.2 59 40.7
Lsat_1_v5_gn_5_40941 Lactuca sativa HOM05D002610 ORTHO05D011576 4.1e-06 57.8 155 28.4
Dinv35320 Davidia involucrata HOM05D000001 ORTHO05D000003 9.1e-06 56.6 374 21.9
Lsat_1_v5_gn_8_149561 Lactuca sativa HOM05D005833 ORTHO05D011576 9.1e-06 56.6 76 32.9


User provided reference genes

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