Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 1.9e-278 961.8 478 100.0
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 1.9e-278 961.8 478 100.0
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 8.3e-274 946.4 483 97.9
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 1.6e-272 942.2 478 98.5
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 4.6e-272 940.6 478 98.3
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 1.6e-264 915.6 478 94.8
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 2.5e-254 881.7 482 90.2
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 9.6e-254 879.8 479 90.2
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 1.5e-251 872.5 479 90.2
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.7e-250 869.0 479 90.2
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-249 866.3 478 89.7
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 6.0e-248 860.5 480 88.1
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 1.6e-245 852.4 478 88.7
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 2.4e-244 848.6 478 88.3
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 3.1e-244 848.2 479 88.7
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 1.6e-240 835.9 479 84.8
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 1.1e-236 823.2 478 84.1
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 2.4e-236 822.0 479 82.5
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 3.4e-235 818.1 477 83.0
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.2e-227 793.1 479 81.0
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 1.5e-214 749.6 477 74.6
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 9.7e-214 746.9 474 76.4
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.1e-212 741.9 473 74.2
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 5.3e-212 741.1 476 74.2
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 9.0e-212 740.3 475 74.5
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.1e-209 733.4 477 73.6
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 1.1e-209 733.4 477 73.4
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.9e-209 732.6 475 74.5
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 5.5e-209 731.1 477 73.2
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.6e-208 729.6 475 73.9
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 2.7e-208 728.8 475 72.8
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 2.7e-208 728.8 478 73.4
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 6.1e-208 727.6 475 73.5
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 6.1e-208 727.6 475 72.8
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 3.0e-207 725.3 479 73.3
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 5.1e-207 724.5 473 73.2
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 7.4e-206 720.7 477 71.7
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 2.8e-205 718.8 475 73.1
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 4.8e-205 718.0 474 72.4
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 8.2e-205 717.2 478 73.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 1.8e-204 716.1 473 72.1
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 1.8e-204 716.1 477 70.4
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 1.8e-204 716.1 468 72.9
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.4e-204 715.7 475 72.8
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 4.1e-204 714.9 476 72.5
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.2e-203 713.4 477 72.7
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 5.9e-203 711.1 476 71.8
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.0e-202 710.3 478 70.7
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 1.7e-202 709.5 473 71.7
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.9e-202 708.8 476 72.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 2.9e-202 708.8 498 70.7
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 6.5e-202 707.6 478 71.5
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.4e-201 706.4 475 72.6
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.2e-201 705.3 475 70.5
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 5.5e-201 704.5 473 71.7
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 5.5e-201 704.5 475 70.9
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 1.2e-200 703.4 477 72.5
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.6e-200 703.0 477 70.4
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.7e-200 702.2 477 70.4
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 4.7e-200 701.4 478 69.9
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.0e-199 700.3 474 70.5
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 1.4e-199 699.9 472 70.3
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.8e-199 699.5 463 72.8
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.3e-199 699.1 490 69.4
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 3.9e-199 698.4 476 71.2
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 6.7e-199 697.6 467 71.7
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-198 696.8 510 67.1
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.6e-198 695.7 475 69.5
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.3e-198 695.3 491 68.6
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 4.4e-198 694.9 476 69.7
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 7.4e-198 694.1 502 67.7
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.3e-197 693.3 487 70.2
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 4.8e-197 691.4 476 69.5
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 6.3e-197 691.0 473 71.7
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 5.3e-196 688.0 502 67.5
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.2e-195 686.8 476 70.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 5.9e-195 684.5 486 68.5
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 3.8e-194 681.8 539 64.7
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 3.8e-194 681.8 491 67.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 6.5e-194 681.0 481 69.0
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 8.5e-194 680.6 513 65.1
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.6e-192 676.4 484 68.4
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.1e-192 674.5 477 69.2
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.1e-192 674.5 477 69.2
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 8.0e-192 674.1 473 68.1
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.3e-191 672.5 474 67.9
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 2.3e-191 672.5 478 66.5
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.0e-191 672.2 469 69.7
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 3.0e-191 672.2 503 65.0
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.2e-191 671.4 477 68.8
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 8.8e-191 670.6 458 70.5
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.0e-190 669.5 474 67.1
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.6e-190 669.1 465 67.7
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 5.7e-190 667.9 475 68.6
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 9.7e-190 667.2 462 68.4
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 2.2e-189 666.0 473 68.5
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 2.8e-189 665.6 472 68.4
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.8e-189 665.6 490 66.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 4.8e-189 664.8 460 69.3
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 8.2e-189 664.1 474 69.0
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 1.1e-188 663.7 474 69.0
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.6e-187 659.8 473 67.0
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 1.6e-187 659.8 476 67.6
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 3.5e-187 658.7 472 69.1
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 3.5e-187 658.7 463 69.3
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 1.1e-185 653.7 458 69.9
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.2e-184 650.2 477 67.5
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.8e-183 646.4 466 68.2
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 7.5e-182 641.0 469 67.8
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 5.4e-180 634.8 618 53.4
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 5.9e-179 631.3 472 65.0
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.2e-171 607.1 516 61.6
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.6e-169 598.2 462 62.3
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 6.8e-167 591.3 475 63.6
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 2.9e-165 585.9 473 62.6
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.8e-159 566.6 363 75.2
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 2.9e-157 559.3 462 60.0
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.1e-156 555.4 366 72.4
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 5.0e-154 548.5 390 67.9
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 6.8e-151 538.1 476 58.0
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 4.6e-147 525.4 467 55.2
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 3.1e-143 512.7 361 69.5
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 2.2e-141 506.5 461 55.5
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 9.2e-140 501.1 475 57.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.0e-139 498.4 484 53.9
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 3.4e-134 482.6 360 66.4
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 5.8e-134 481.9 326 71.8
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.9e-132 476.9 380 64.7
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 2.9e-125 453.0 325 66.5
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 2.0e-118 430.3 289 69.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.8e-109 399.4 472 46.4
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 9.3e-108 394.8 280 67.1
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 1.6e-107 394.0 483 46.4
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 6.9e-103 378.6 283 64.7
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 5.5e-100 369.0 236 73.7
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 2.5e-97 360.1 219 76.7
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 1.2e-94 351.3 213 77.9
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 2.0e-94 350.5 217 76.0
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 3.8e-93 346.3 233 70.4
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 1.9e-92 344.0 237 69.6
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.6e-91 339.7 238 69.7
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 5.3e-87 325.9 235 65.1
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 1.2e-86 324.7 454 41.0
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 1.7e-85 320.9 261 60.2
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 9.1e-79 298.5 467 36.8
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 8.5e-77 292.0 200 68.0
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.5e-76 290.4 185 76.2
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 4.0e-74 283.1 271 50.9
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.8e-63 247.7 170 69.4
Actinidia24503 Actinidia chinensis HOM05D003767 ORTHO05D004507 5.4e-63 246.1 281 49.8
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 5.5e-60 236.1 184 65.8
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 4.0e-58 229.9 491 33.6
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 7.7e-54 215.7 152 65.8
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.0e-53 215.3 277 47.3
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.8e-53 213.4 142 71.1
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 2.5e-52 210.7 153 71.9
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 5.0e-45 186.4 321 42.1
Eucgr.H04446 Eucalyptus grandis HOM05D003767 ORTHO05D004507 5.6e-44 183.0 114 76.3
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 7.3e-44 182.6 320 41.2
Nn1g02104 Nelumbo nucifera HOM05D003767 ORTHO05D004507 3.6e-43 180.3 125 65.6
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 8.9e-42 175.6 98 83.7
CDE02G2107 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 2.9e-40 170.6 124 65.3
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 6.6e-37 159.5 136 53.7
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 1.2e-30 138.7 88 73.9
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 1.7e-29 134.8 95 66.3
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 8.6e-29 132.5 76 78.9
TAR636G2499 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.2e-27 128.6 77 81.8
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 2.1e-27 127.9 102 65.7
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-26 125.2 145 48.3
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.0e-26 123.6 80 70.0
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 1.6e-22 111.7 64 76.6
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.7e-21 108.2 61 80.3
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 5.1e-21 106.7 71 70.4
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 1.9e-20 104.8 94 52.1
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 7.3e-20 102.8 77 64.9
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 3.1e-18 97.4 80 61.2
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 4.0e-18 97.1 78 50.0
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 5.8e-17 93.2 84 53.6
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 7.6e-17 92.8 86 51.2
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 1.3e-13 82.0 48 79.2
SMO304G0024 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 3.0e-13 80.9 164 37.8
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-12 79.0 64 54.7
RcHm_v2.0_Chr2g0172951 Rosa chinensis HOM05D003767 ORTHO05D004507 4.8e-11 73.6 51 62.7
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 1.4e-10 72.0 48 72.9
SMO164G0207 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.3e-10 70.1 111 42.3
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 5.8e-09 66.6 39 79.5
SMO164G0195 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.9e-07 61.6 156 34.0


User provided reference genes

Program Settings