Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.5e-300 1035.4 521 100.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 9.7e-284 979.5 521 94.4
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.3e-283 979.2 521 94.4
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 8.2e-283 976.5 521 94.4
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 5.9e-281 970.3 520 93.7
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.7e-280 968.8 512 95.1
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 3.6e-278 961.1 521 92.1
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 4.6e-278 960.7 521 92.3
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 3.3e-276 954.5 522 92.7
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.7e-275 952.2 521 91.7
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 5.3e-274 947.2 521 91.2
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 4.7e-262 907.5 538 85.5
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.0e-245 851.7 521 83.1
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.2e-241 839.7 515 82.9
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 3.1e-234 815.1 504 85.3
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 3.2e-226 788.5 483 84.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.2e-225 786.6 480 79.8
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 3.5e-225 785.0 473 80.5
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 3.9e-224 781.6 473 80.5
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 6.6e-224 780.8 473 80.3
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 6.6e-224 780.8 457 82.7
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.5e-223 779.6 471 79.6
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.9e-223 779.2 473 80.3
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 9.5e-223 776.9 521 78.7
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 9.5e-223 776.9 520 75.2
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 6.2e-222 774.2 460 80.4
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 8.0e-222 773.9 461 80.3
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 8.0e-222 773.9 479 78.9
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.1e-221 773.5 485 78.1
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.4e-221 773.1 469 79.5
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.4e-221 773.1 478 78.5
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 2.3e-221 772.3 514 75.5
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 2.3e-221 772.3 463 80.8
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.1e-221 771.9 514 75.3
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 3.1e-221 771.9 523 73.0
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 3.1e-221 771.9 471 78.8
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.1e-221 771.9 461 80.0
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 4.0e-221 771.5 514 74.9
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 4.0e-221 771.5 489 76.7
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 6.8e-221 770.8 508 76.0
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.9e-221 770.4 461 79.8
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.5e-220 769.6 514 75.7
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.5e-220 769.6 512 74.4
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.0e-220 769.2 506 76.5
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.4e-220 768.5 519 73.2
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 4.4e-220 768.1 512 74.6
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 5.8e-220 767.7 477 77.8
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 7.5e-220 767.3 515 74.4
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.8e-220 766.9 513 75.8
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.3e-219 766.5 511 74.0
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.3e-219 766.5 515 74.0
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 6.4e-219 764.2 459 80.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 6.4e-219 764.2 530 71.7
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 3.2e-218 761.9 463 79.3
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.2e-218 761.9 475 77.7
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 5.4e-218 761.1 461 79.4
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.4e-218 761.1 514 74.5
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 7.0e-218 760.8 501 75.0
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 7.0e-218 760.8 462 78.8
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.2e-217 760.0 459 79.1
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.2e-217 760.0 522 73.2
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 2.1e-217 759.2 532 72.0
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.5e-217 758.4 504 74.2
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.0e-217 757.7 460 79.1
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 7.8e-217 757.3 516 73.1
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.0e-216 756.9 518 73.0
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.7e-216 756.1 518 73.2
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.3e-216 755.7 520 72.7
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 3.9e-216 755.0 507 73.0
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 5.1e-216 754.6 514 72.2
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 1.9e-215 752.7 482 74.7
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 3.3e-215 751.9 504 73.0
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.3e-215 751.5 496 73.2
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.6e-215 751.1 459 77.8
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.5e-215 750.4 480 76.2
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 9.5e-215 750.4 509 71.9
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 1.6e-214 749.6 483 76.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.8e-214 748.8 488 74.2
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.8e-214 748.8 493 74.0
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.6e-214 748.4 493 74.2
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 3.6e-214 748.4 463 77.3
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 4.7e-214 748.0 474 75.1
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 4.7e-214 748.0 458 77.3
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 8.1e-214 747.3 517 72.0
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.4e-213 746.5 512 71.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.8e-213 746.1 508 74.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.3e-213 745.7 514 72.6
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.3e-213 745.7 503 72.2
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 5.2e-213 744.6 466 77.5
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 1.2e-212 743.4 532 70.5
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 4.4e-212 741.5 520 72.1
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.2e-211 739.2 511 72.4
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 4.9e-211 738.0 508 72.8
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 6.4e-211 737.6 506 71.9
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 8.3e-211 737.3 516 70.3
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 1.9e-210 736.1 512 70.5
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 5.4e-210 734.6 565 67.4
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 4.6e-209 731.5 459 75.6
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 1.7e-208 729.6 473 81.8
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 3.9e-208 728.4 550 67.5
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 3.9e-208 728.4 485 73.4
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 6.6e-208 727.6 518 74.9
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.4e-205 719.2 485 72.0
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 2.0e-204 716.1 511 70.5
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 9.2e-202 707.2 490 72.9
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 1.6e-201 706.4 462 72.7
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.3e-200 703.4 515 68.3
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 4.3e-199 698.4 511 67.7
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.8e-197 693.0 470 69.1
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.6e-196 689.1 507 69.0
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 7.6e-196 687.6 460 72.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 2.2e-195 686.0 460 69.8
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.2e-193 680.2 410 78.8
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 7.3e-191 671.0 450 71.8
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 9.6e-191 670.6 465 71.0
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 6.2e-190 667.9 479 67.4
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 5.3e-189 664.8 441 77.3
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 2.2e-187 659.4 457 70.7
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.9e-187 659.1 437 76.4
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 6.4e-187 657.9 440 77.7
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 7.9e-185 651.0 431 72.9
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 6.7e-184 647.9 520 66.0
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 1.0e-176 624.0 373 78.6
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.3e-176 622.9 453 66.0
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 1.1e-175 620.5 373 77.5
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 9.6e-175 617.5 382 80.4
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.5e-172 610.1 385 84.4
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 1.3e-168 597.0 712 47.5
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 1.4e-157 560.5 339 82.3
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.3e-149 531.9 417 67.1
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 7.3e-114 415.2 258 83.7
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 1.2e-113 414.5 312 69.6
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 3.5e-108 396.4 237 78.9
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 5.1e-99 365.9 292 61.6
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.7e-97 359.4 460 42.0
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 3.3e-90 336.7 467 39.2
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.8e-87 325.9 455 39.1
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.6e-84 317.8 201 76.1
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 3.8e-78 296.6 228 65.8
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-62 243.8 165 77.0
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 9.3e-61 238.8 134 88.1
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.6e-60 238.0 384 39.6
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 6.0e-60 236.1 131 84.0
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 7.9e-60 235.7 249 55.4
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.1e-56 225.3 192 63.0
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.3e-51 207.6 170 58.2
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.8e-49 200.7 196 54.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.0e-43 182.2 373 31.4
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 2.3e-43 181.0 122 62.3
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.7e-41 174.9 98 84.7
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 1.4e-37 161.8 91 84.6
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 6.1e-36 156.4 93 88.2
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 8.8e-35 152.5 74 95.9
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 4.4e-34 150.2 122 58.2
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 2.9e-30 137.5 80 76.2
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.2e-29 134.0 293 30.0
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 7.5e-26 122.9 130 41.5
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 9.7e-26 122.5 60 98.3
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 9.7e-26 122.5 100 62.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.4e-24 118.6 120 55.0
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 3.0e-11 74.3 41 78.0
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 8.8e-11 72.8 47 70.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 8.8e-11 72.8 43 74.4
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.7e-09 68.6 111 45.0
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 5.9e-07 60.1 35 77.1
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 3.8e-06 57.4 38 68.4
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 8.6e-06 56.2 48 60.4


User provided reference genes

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