Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 7.8e-95 350.5 185 100.0
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 7.8e-95 350.5 185 100.0
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 3.3e-93 345.1 184 98.9
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 6.2e-92 340.9 185 97.3
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 1.1e-91 340.1 185 96.8
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 1.2e-90 336.7 184 97.3
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 2.4e-83 312.4 185 90.3
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 1.6e-79 299.7 184 84.8
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 1.6e-79 299.7 185 85.4
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 1.6e-79 299.7 184 84.8
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 6.0e-79 297.7 185 85.4
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 1.0e-78 297.0 184 84.8
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 4.0e-75 285.0 184 83.2
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 1.2e-74 283.5 186 82.8
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 7.9e-71 270.8 186 79.0
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 3.9e-70 268.5 184 78.3
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 3.9e-70 268.5 184 78.3
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 3.6e-68 261.9 186 77.4
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 4.8e-68 261.5 184 76.6
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 4.8e-68 261.5 184 76.6
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 1.1e-61 240.4 193 71.5
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 3.8e-49 198.7 187 64.7
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 3.8e-49 198.7 199 60.3
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 6.1e-47 191.4 199 58.3
CARHR200230 Cardamine hirsuta HOM05D006285 ORTHO05D007249 7.9e-47 191.0 175 65.7
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 2.3e-38 162.9 192 51.6
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 5.7e-37 158.3 184 54.3
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 9.7e-37 157.5 192 50.0
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 3.7e-36 155.6 184 52.2
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 4.8e-36 155.2 187 50.8
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 3.1e-35 152.5 192 49.0
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 5.3e-35 151.8 191 49.7
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 1.5e-34 150.2 187 49.7
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 2.0e-34 149.8 192 48.4
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 3.4e-34 149.1 213 46.0
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 5.9e-34 148.3 188 52.7
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 5.9e-34 148.3 188 52.7
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 5.9e-34 148.3 187 48.1
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 1.0e-33 147.5 191 48.2
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 1.3e-33 147.1 192 48.4
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 3.8e-33 145.6 190 48.9
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 1.1e-32 144.1 193 48.7
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 1.4e-32 143.7 185 48.6
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 3.2e-32 142.5 187 51.3
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 4.2e-32 142.1 189 47.1
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 4.2e-32 142.1 189 47.1
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 7.2e-32 141.4 186 48.9
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 3.6e-31 139.0 213 46.0
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 1.4e-30 137.1 191 47.6
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 1.4e-30 137.1 192 45.3
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 3.9e-30 135.6 192 46.4
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 6.7e-30 134.8 195 46.2
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 1.1e-29 134.0 188 46.8
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 5.7e-29 131.7 194 43.3
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 9.7e-29 131.0 186 47.3
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 9.7e-29 131.0 187 46.5
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 2.8e-28 129.4 192 43.8
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 8.2e-28 127.9 200 44.5
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 4.1e-27 125.6 203 41.9
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 4.1e-27 125.6 200 43.5
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.0e-26 123.2 185 45.9
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.0e-26 123.2 185 44.3
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 2.0e-26 123.2 191 45.0
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 4.5e-26 122.1 204 42.2
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 5.9e-26 121.7 184 42.9
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 5.9e-26 121.7 202 45.5
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 7.7e-26 121.3 185 45.9
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 2.2e-25 119.8 199 43.7
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 2.2e-25 119.8 181 45.3
Cpa.g.sc207.10 Carica papaya HOM05D006285 ORTHO05D007249 2.2e-25 119.8 177 44.1
Manes.08G102800 Manihot esculenta HOM05D006285 ORTHO05D007249 2.2e-25 119.8 139 47.5
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 6.5e-25 118.2 201 41.8
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 1.5e-24 117.1 195 42.1
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 1.2e-23 114.0 189 42.3
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 3.6e-23 112.5 188 43.1
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 1.0e-22 110.9 191 42.9
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 1.0e-22 110.9 185 40.0
Oeu019430.1 Olea europaea HOM05D006285 ORTHO05D007249 2.0e-21 106.7 148 45.3
Gohir.A01G021000 Gossypium hirsutum HOM05D006285 ORTHO05D007249 4.4e-21 105.5 129 53.5
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 1.3e-20 104.0 153 48.4
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 4.8e-20 102.1 185 41.6
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 2.4e-19 99.8 185 40.0
TWI36G1029 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 4.1e-19 99.0 150 42.7
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 5.3e-19 98.6 191 41.4
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 2.7e-18 96.3 189 40.7
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 5.9e-18 95.1 185 37.3
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 1.1e-16 90.9 211 35.5
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 1.5e-16 90.5 210 35.7
ECA233G3183 Erigeron canadensis HOM05D006285 ORTHO05D007249 4.2e-16 89.0 164 38.4
Nn4g22189 Nelumbo nucifera HOM05D006285 ORTHO05D007249 4.2e-16 89.0 141 39.7
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 7.2e-16 88.2 180 40.6
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 9.4e-16 87.8 180 41.1
Ah.03g135710 Amaranthus hybridus HOM05D000002 ORTHO05D000047 1.6e-15 87.0 162 41.4
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 1.6e-15 87.0 191 35.1
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 1.0e-14 84.3 195 34.4
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 2.3e-14 83.2 163 39.3
SalBow2G0692 Salvia bowleyana HOM05D006285 ORTHO05D007249 1.2e-13 80.9 119 44.5
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 2.0e-13 80.1 204 36.3
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 2.0e-13 80.1 179 34.1
Nn3g16318 Nelumbo nucifera HOM05D006285 ORTHO05D007249 3.4e-13 79.3 175 33.7
MBI07_g36277_MAGBIO Magnolia biondii HOM05D006285 ORTHO05D007249 4.4e-13 79.0 184 36.4
FAN12G2625 Fragaria x ananassa HOM05D006285 ORTHO05D007249 5.7e-13 78.6 207 34.3
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 9.8e-13 77.8 186 35.5
CDE02G4729 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 1.7e-12 77.0 133 39.1
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 1.7e-12 77.0 206 33.5
FAN07G2449 Fragaria x ananassa HOM05D006285 ORTHO05D007249 1.7e-12 77.0 204 34.8
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 1.7e-12 77.0 163 40.5
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 2.2e-12 76.6 172 34.9
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 4.8e-12 75.5 204 33.8
Oeu055473.1 Olea europaea HOM05D006285 ORTHO05D007249 4.1e-11 72.4 187 33.2
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 7.0e-11 71.6 115 44.3
SEGI_20867 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 9.1e-11 71.2 100 46.0
Sc11g0000190 Simmondsia chinensis HOM05D006285 ORTHO05D007249 3.5e-10 69.3 133 39.8
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 5.9e-10 68.6 152 37.5
ClCG07G011740 Citrullus lanatus HOM05D006285 ORTHO05D007249 7.2e-08 61.6 92 42.4
AUR62028862 Chenopodium quinoa HOM05D006285 ORTHO05D007249 9.5e-08 61.2 125 37.6
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 9.5e-08 61.2 209 27.8
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 9.5e-08 61.2 97 42.3
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 9.5e-08 61.2 97 42.3
Gohir.A05G034800 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.6e-07 60.5 98 42.9
Aqoxy3G01789 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 4.7e-07 58.9 95 43.2
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 4.7e-07 58.9 186 30.6
ECA236G0223 Erigeron canadensis HOM05D001047 ORTHO05D000768 6.1e-07 58.5 105 38.1
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 8.0e-07 58.2 83 43.4
SEGI_23736 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 1.8e-06 57.0 163 33.1
Oeu003277.1 Olea europaea HOM05D006285 ORTHO05D007249 3.0e-06 56.2 189 31.2
Lsat_1_v5_gn_8_85820 Lactuca sativa HOM05D001047 ORTHO05D000768 5.2e-06 55.5 82 42.7
Os04g0395800 Oryza sativa ssp. japonica HOM05D006285 ORTHO05D007249 5.2e-06 55.5 81 45.7
Zm00001eb084980 Zea mays HOM05D006285 ORTHO05D007249 8.8e-06 54.7 82 42.7


User provided reference genes

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