Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01386 Brassica carinata HOM05D004729 ORTHO05D005451 4.6e-225 784.3 400 100.0
C09p08700 Brassica napus HOM05D004729 ORTHO05D005451 9.2e-125 451.1 255 85.9
BolC9t53782H Brassica oleracea HOM05D004729 ORTHO05D005451 2.0e-124 449.9 255 85.9
BcaC04g23401 Brassica carinata HOM05D004729 ORTHO05D005451 8.0e-121 438.0 247 85.8
AT2G25710 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 4.0e-112 409.1 253 78.7
Carub.0004s0560 Capsella rubella HOM05D004729 ORTHO05D005451 7.5e-111 404.8 255 75.7
Aa31LG7G12040 Aethionema arabicum HOM05D004729 ORTHO05D005451 1.7e-110 403.7 253 77.9
AL1G51210 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 3.7e-110 402.5 255 76.1
Sp1g31520 Schrenkiella parvula HOM05D004729 ORTHO05D005451 8.3e-110 401.4 253 77.1
AL4G17320 Arabidopsis lyrata HOM05D004729 ORTHO05D005451 1.1e-109 401.0 253 78.7
Thhalv10027838m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 1.4e-109 400.6 253 75.9
Carub.0004s0549 Capsella rubella HOM05D004729 ORTHO05D005451 2.4e-109 399.8 256 77.3
CARHR115540 Cardamine hirsuta HOM05D004729 ORTHO05D005451 4.1e-109 399.1 254 76.8
AT1G37150 Arabidopsis thaliana HOM05D004729 ORTHO05D005451 2.7e-108 396.4 255 75.7
BcaB05g24351 Brassica carinata HOM05D004729 ORTHO05D005451 4.7e-105 385.6 253 73.5
BcaC03g14925 Brassica carinata HOM05D004729 ORTHO05D005451 1.3e-102 377.5 249 74.3
BolC2t08529H Brassica oleracea HOM05D004729 ORTHO05D005451 1.3e-102 377.5 249 74.3
C02p24210 Brassica napus HOM05D004729 ORTHO05D005451 2.9e-102 376.3 249 74.3
BraA02t06545Z Brassica rapa HOM05D004729 ORTHO05D005451 6.4e-102 375.2 249 73.5
A02p14780 Brassica napus HOM05D004729 ORTHO05D005451 4.1e-101 372.5 249 73.1
THA.LOC104817066 Tarenaya hassleriana HOM05D004729 ORTHO05D005451 7.1e-101 371.7 253 70.0
FAN24G1570 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.2e-97 360.9 255 67.1
Prupe.1G503900 Prunus persica HOM05D004729 ORTHO05D005451 1.2e-97 360.9 255 65.9
FvH4_2g26260 Fragaria vesca HOM05D004729 ORTHO05D005451 1.6e-97 360.5 255 66.7
Atru.chr13.1337 Acer truncatum HOM05D004729 ORTHO05D005451 6.2e-97 358.6 255 63.5
Atru.chr13.1380 Acer truncatum HOM05D004729 ORTHO05D005451 6.2e-97 358.6 255 63.5
FAN27G3155 Fragaria x ananassa HOM05D004729 ORTHO05D005451 1.8e-96 357.1 255 66.7
FAN15G1542 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.0e-96 355.9 255 65.9
RcHm_v2.0_Chr6g0294871 Rosa chinensis HOM05D004729 ORTHO05D005451 1.5e-95 354.0 255 64.7
COL.COLO4_38234 Corchorus olitorius HOM05D004729 ORTHO05D005451 2.0e-95 353.6 282 59.2
QL09p035890 Quercus lobata HOM05D004729 ORTHO05D005451 9.9e-95 351.3 255 66.3
TAR151G0002 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.9e-94 349.7 255 65.1
MD08G1169900 Malus domestica HOM05D004729 ORTHO05D005451 1.1e-93 347.8 255 63.9
MD15G1356700 Malus domestica HOM05D004729 ORTHO05D005451 1.1e-93 347.8 255 63.1
GSVIVG01008929001 Vitis vinifera HOM05D004729 ORTHO05D005451 1.4e-93 347.4 255 63.1
Thecc.08G118600 Theobroma cacao HOM05D004729 ORTHO05D005451 3.2e-93 346.3 255 63.1
Haze_00501 Corylus avellana HOM05D004729 ORTHO05D005451 9.3e-93 344.7 255 62.7
Cpa.g.sc36.9 Carica papaya HOM05D004729 ORTHO05D005451 2.7e-92 343.2 255 62.0
Duzib093G1993 Durio zibethinus HOM05D004729 ORTHO05D005451 4.6e-92 342.4 255 62.0
Manes.02G159900 Manihot esculenta HOM05D004729 ORTHO05D005451 4.6e-92 342.4 251 62.9
Duzib116G0142 Durio zibethinus HOM05D004729 ORTHO05D005451 6.0e-92 342.0 255 62.7
CSS0005799 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 7.8e-92 341.7 256 61.3
Ciclev10001583m.g Citrus clementina HOM05D004729 ORTHO05D005451 7.8e-92 341.7 255 61.6
Dinv07919 Davidia involucrata HOM05D004729 ORTHO05D005451 7.8e-92 341.7 254 61.4
Lj4C592G4 Lonicera japonica HOM05D004729 ORTHO05D005451 7.8e-92 341.7 250 62.4
CSS0018062 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.3e-91 340.1 261 60.2
TWI56G0049 Tripterygium wilfordii HOM05D004729 ORTHO05D005451 2.3e-91 340.1 255 62.4
CiPaw.05G227200 Carya illinoinensis HOM05D004729 ORTHO05D005451 5.1e-91 339.0 253 64.4
Gorai.009G243000 Gossypium raimondii HOM05D004729 ORTHO05D005451 1.1e-90 337.8 252 62.7
Psat5g133600 Pisum sativum HOM05D004729 ORTHO05D005451 1.9e-90 337.0 247 62.8
TAR628G0451 Trochodendron aralioides HOM05D004729 ORTHO05D005451 2.5e-90 336.7 251 62.9
arahy.Tifrunner.gnm1.ann1.CLQ5CM Arachis hypogaea HOM05D004729 ORTHO05D005451 3.3e-90 336.3 253 62.5
Hund27047 Selenicereus undatus HOM05D004729 ORTHO05D005451 4.3e-90 335.9 243 64.6
TPR.G22343 Trifolium pratense HOM05D004729 ORTHO05D005451 4.3e-90 335.9 250 63.2
Potri.002G087700 Populus trichocarpa HOM05D004729 ORTHO05D005451 5.6e-90 335.5 248 64.5
Gohir.D05G234700 Gossypium hirsutum HOM05D004729 ORTHO05D005451 7.3e-90 335.1 252 62.3
Eucgr.F03750 Eucalyptus grandis HOM05D004729 ORTHO05D005451 2.1e-89 333.6 250 60.4
Medtr3g073010 Medicago truncatula HOM05D004729 ORTHO05D005451 2.1e-89 333.6 250 62.4
Gohir.A05G236400 Gossypium hirsutum HOM05D004729 ORTHO05D005451 8.1e-89 331.6 252 61.5
Potri.005G173000 Populus trichocarpa HOM05D004729 ORTHO05D005451 1.4e-88 330.9 248 61.7
Lalb_Chr23g0270821 Lupinus albus HOM05D004729 ORTHO05D005451 3.1e-88 329.7 255 60.0
arahy.Tifrunner.gnm1.ann1.J2YLH9 Arachis hypogaea HOM05D004729 ORTHO05D005451 4.0e-88 329.3 246 61.8
Sc23g0000860 Simmondsia chinensis HOM05D004729 ORTHO05D005451 5.3e-88 328.9 246 63.0
MELO3C012993.2 Cucumis melo HOM05D004729 ORTHO05D005451 6.9e-88 328.6 255 57.3
Hma1.2p1_0542F.1_g174920 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 9.0e-88 328.2 251 60.6
CsaV3_3G023700 Cucumis sativus L. HOM05D004729 ORTHO05D005451 1.5e-87 327.4 255 57.3
Nn1g08655 Nelumbo nucifera HOM05D004729 ORTHO05D005451 2.0e-87 327.0 255 59.6
Glyma.04G252900 Glycine max HOM05D004729 ORTHO05D005451 2.6e-87 326.6 251 61.0
SalBow7G0963 Salvia bowleyana HOM05D004729 ORTHO05D005451 2.6e-87 326.6 253 60.5
MBI06_g01065_MAGBIO Magnolia biondii HOM05D004729 ORTHO05D005451 5.8e-87 325.5 253 61.3
Actinidia23053 Actinidia chinensis HOM05D004729 ORTHO05D005451 1.7e-86 323.9 247 60.3
CANSAT78G0882 Cannabis sativa HOM05D004729 ORTHO05D005451 2.9e-86 323.2 253 60.1
DCAR_024544 Daucus carota HOM05D004729 ORTHO05D005451 3.8e-86 322.8 251 61.8
Lj1g0017363 Lotus japonicus HOM05D004729 ORTHO05D005451 8.4e-86 321.6 250 60.8
Oeu017724.4 Olea europaea HOM05D004729 ORTHO05D005451 1.1e-85 321.2 253 58.5
VMungo1309G0261 Vigna mungo HOM05D004729 ORTHO05D005451 2.4e-85 320.1 253 60.9
Cc10_g10550 Coffea canephora HOM05D004729 ORTHO05D005451 3.2e-85 319.7 253 59.3
DCAR_024606 Daucus carota HOM05D004729 ORTHO05D005451 9.3e-85 318.2 251 60.6
Phvul.009G121400 Phaseolus vulgaris HOM05D004729 ORTHO05D005451 9.3e-85 318.2 250 62.0
SGA_v2.0_scaffold52G19009 Striga asiatica HOM05D004729 ORTHO05D005451 9.3e-85 318.2 255 58.0
Glyma.06G109600 Glycine max HOM05D004729 ORTHO05D005451 1.6e-84 317.4 251 59.4
Migut.C01178 Erythranthe guttata HOM05D004729 ORTHO05D005451 6.0e-84 315.5 253 58.9
Oeu032968.2 Olea europaea HOM05D004729 ORTHO05D005451 1.0e-83 314.7 251 57.4
PGR042G2886 Punica granatum HOM05D004729 ORTHO05D005451 5.1e-83 312.4 255 56.1
Aqoxy1G01637 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 6.6e-83 312.0 247 60.3
Aqoxy5G04147 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.9e-82 310.5 251 59.0
SGA_v2.0_scaffold24G10496 Striga asiatica HOM05D004729 ORTHO05D005451 5.6e-82 308.9 253 56.1
PSO170G2478 Papaver somniferum HOM05D004729 ORTHO05D005451 1.3e-81 307.8 244 59.0
ATR0684G041 Amborella trichopoda HOM05D004729 ORTHO05D005451 2.1e-81 307.0 254 57.5
PSO528G0069 Papaver somniferum HOM05D004729 ORTHO05D005451 2.8e-81 306.6 244 58.6
EL10Ac1g00023 Beta vulgaris HOM05D004729 ORTHO05D005451 4.8e-81 305.8 260 56.9
MSTRG.25403 Avicennia marina HOM05D004729 ORTHO05D005451 1.1e-80 304.7 253 56.1
Lsat_1_v5_gn_8_107920 Lactuca sativa HOM05D004729 ORTHO05D005451 2.0e-79 300.4 255 56.9
Ah.05g172360 Amaranthus hybridus HOM05D004729 ORTHO05D005451 7.6e-79 298.5 245 57.6
CDE08G0072 Ceratophyllum demersum HOM05D004729 ORTHO05D005451 7.6e-79 298.5 247 56.3
HanXRQChr06g0181001 Helianthus annuus HOM05D004729 ORTHO05D005451 2.9e-78 296.6 255 57.3
Nitab4.5_0000494g0050 Nicotiana tabacum HOM05D004729 ORTHO05D005451 2.7e-76 290.0 251 57.0
AUR62023623 Chenopodium quinoa HOM05D004729 ORTHO05D005451 6.0e-76 288.9 215 61.4
ECA236G4997 Erigeron canadensis HOM05D004729 ORTHO05D005451 1.3e-75 287.7 254 57.5
Solyc11g013200.2 Solanum lycopersicum HOM05D004729 ORTHO05D005451 2.3e-75 287.0 246 54.9
Sed0026543 Sechium edule HOM05D004729 ORTHO05D005451 8.7e-75 285.0 323 45.5
Sopen11g008240 Solanum pennellii HOM05D004729 ORTHO05D005451 8.7e-75 285.0 246 54.5
Nitab4.5_0000193g0110 Nicotiana tabacum HOM05D004729 ORTHO05D005451 1.1e-74 284.6 252 54.8
HPP92_002257 Vanilla planifolia HOM05D004729 ORTHO05D005451 2.5e-74 283.5 246 56.5
Thhalv10004827m.g Eutrema salsugineum HOM05D004729 ORTHO05D005451 9.6e-74 281.6 164 78.7
CAN.G321.55 Capsicum annuum HOM05D004729 ORTHO05D005451 1.6e-73 280.8 255 53.7
Lsat_1_v5_gn_3_63181 Lactuca sativa HOM05D004729 ORTHO05D005451 4.0e-72 276.2 255 51.8
CAN.G630.60 Capsicum annuum HOM05D004729 ORTHO05D005451 6.9e-72 275.4 255 53.7
ClCG11G010630 Citrullus lanatus HOM05D004729 ORTHO05D005451 1.5e-71 274.2 271 48.0
SHI32261 Sapria himalayana HOM05D004729 ORTHO05D005451 2.6e-71 273.5 256 49.6
unitig_46.g18427 Utricularia gibba HOM05D004729 ORTHO05D005451 7.6e-71 271.9 256 51.6
Zm00001eb232860 Zea mays HOM05D004729 ORTHO05D005451 1.7e-70 270.8 248 51.2
Os02g0167000 Oryza sativa ssp. japonica HOM05D004729 ORTHO05D005451 3.8e-70 269.6 245 52.7
FAN18G3003 Fragaria x ananassa HOM05D004729 ORTHO05D005451 4.9e-70 269.2 255 53.7
Peaxi162Scf00679g00006 Petunia axillaris HOM05D004729 ORTHO05D005451 1.9e-69 267.3 244 55.3
SalBow7G1557 Salvia bowleyana HOM05D004729 ORTHO05D005451 6.0e-68 262.3 198 62.6
AUR62029101 Chenopodium quinoa HOM05D004729 ORTHO05D005451 1.0e-62 245.0 242 50.0
CSS0041333 Camellia sinensis var. sinensis HOM05D004729 ORTHO05D005451 2.2e-62 243.8 212 55.2
Peaxi162Scf00412g00069 Petunia axillaris HOM05D004729 ORTHO05D005451 6.5e-62 242.3 232 52.2
Pp3c9_4090 Physcomitrium patens HOM05D004729 ORTHO05D005451 2.3e-59 233.8 200 51.0
AagrBONN_evm.TU.Sc2ySwM_117.2782 Anthoceros agrestis HOM05D004729 ORTHO05D005451 5.9e-55 219.2 202 49.0
Mapoly0100s0036 Marchantia polymorpha HOM05D004729 ORTHO05D005451 3.2e-53 213.4 242 41.3
arahy.Tifrunner.gnm1.ann1.XVDB66 Arachis hypogaea HOM05D004729 ORTHO05D005451 2.1e-52 210.7 143 67.8
Nn5g28096 Nelumbo nucifera HOM05D004729 ORTHO05D005451 1.1e-50 204.9 141 62.4
Aa31LG6G9140 Aethionema arabicum HOM05D004729 ORTHO05D005451 2.6e-50 203.8 126 76.2
Nn1g08666 Nelumbo nucifera HOM05D004729 ORTHO05D005451 5.3e-48 196.1 168 56.5
FvH4_5g31361 Fragaria vesca HOM05D004729 ORTHO05D005451 1.2e-47 194.9 121 71.9
Manes.18G073729 Manihot esculenta HOM05D004729 ORTHO05D005451 1.7e-46 191.0 207 50.2
SMO356G0070 Selaginella moellendorffii HOM05D004729 ORTHO05D005451 9.4e-45 185.3 156 53.2
CBR_g4408 Chara braunii HOM05D004729 ORTHO05D005451 1.2e-44 184.9 198 44.4
Rhsim11G0066000 Rhododendron simsii HOM05D004729 ORTHO05D005451 8.8e-43 178.7 152 53.9
Lj3g0025484 Lotus japonicus HOM05D004729 ORTHO05D005451 4.8e-41 172.9 121 62.8
A09p07790 Brassica napus HOM05D004729 ORTHO05D005451 4.5e-39 166.4 113 75.2
BraA09t36427Z Brassica rapa HOM05D004729 ORTHO05D005451 5.0e-38 162.9 111 74.8
MCO05G148 Micromonas commoda HOM05D004729 ORTHO05D005451 4.8e-33 146.4 170 42.9
SEGI_02892 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 3.1e-32 143.7 149 47.0
PRCOL_00005327 Prasinoderma coloniale HOM05D004729 ORTHO05D005451 2.0e-31 141.0 178 38.8
Cre09.g406000 Chlamydomonas reinhardtii HOM05D004729 ORTHO05D005451 9.4e-29 132.1 147 44.9
SEGI_13253 Sequoiadendron giganteum HOM05D004729 ORTHO05D005451 1.0e-27 128.6 128 49.2
FvH4_5g31362 Fragaria vesca HOM05D004729 ORTHO05D005451 5.2e-27 126.3 120 51.7
Lalb_Chr11g0065751 Lupinus albus HOM05D004729 ORTHO05D005451 2.8e-20 104.0 111 45.9
Cfa026220 Carpinus fangiana HOM05D004729 ORTHO05D005451 3.6e-20 103.6 208 33.2
arahy.Tifrunner.gnm1.ann1.M1Z3QL Arachis hypogaea HOM05D004729 ORTHO05D005451 6.1e-20 102.8 118 44.9
Haze_27035 Corylus avellana HOM05D000050 ORTHO05D005451 8.8e-19 99.0 228 30.7
BcaC04g23297 Brassica carinata HOM05D009868 ORTHO05D012410 8.3e-17 92.4 96 64.6
C09p10000 Brassica napus HOM05D009868 ORTHO05D012410 8.3e-17 92.4 96 64.6
C09p10040 Brassica napus HOM05D009868 ORTHO05D012410 8.3e-17 92.4 96 64.6
BolC9t53908H Brassica oleracea HOM05D009868 ORTHO05D012410 8.3e-17 92.4 96 64.6
BcaB04g19986 Brassica carinata HOM05D009868 ORTHO05D012410 2.4e-16 90.9 81 70.4
Thhalv10005693m.g Eutrema salsugineum HOM05D009868 ORTHO05D012410 7.0e-16 89.4 106 60.4
Hma1.2p1_0009F.1_g006083 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.0e-16 89.4 91 49.5
Hma1.2p1_0009F.1_g006090 Hydrangea macrophylla HOM05D004729 ORTHO05D005451 7.0e-16 89.4 91 49.5
Aqoxy5G04170 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.3e-14 85.1 112 41.1
A09p08780 Brassica napus HOM05D009868 ORTHO05D012410 1.5e-13 81.6 96 59.4
arahy.Tifrunner.gnm1.ann1.7BX7P6 Arachis hypogaea HOM05D004729 ORTHO05D009789 1.4e-11 75.1 79 51.9
C02p63510 Brassica napus HOM05D009868 ORTHO05D012410 9.8e-10 68.9 103 54.4
BolC2t12416H Brassica oleracea HOM05D009868 ORTHO05D012410 9.8e-10 68.9 103 54.4
BcaB02g09812 Brassica carinata HOM05D009868 ORTHO05D012410 1.4e-08 65.1 90 53.3
BraA06t26085Z Brassica rapa HOM05D009868 ORTHO05D027327 1.2e-07 62.0 106 48.1
CARHR278680 Cardamine hirsuta HOM05D009868 ORTHO05D012410 7.8e-07 59.3 130 44.6
Aqoxy356s001 Aquilegia oxysepala HOM05D004729 ORTHO05D005451 1.3e-06 58.5 46 60.9
A06p31480 Brassica napus HOM05D009868 ORTHO05D027327 2.3e-06 57.8 120 42.5
Sp2g27760 Schrenkiella parvula HOM05D009868 ORTHO05D012410 3.0e-06 57.4 137 40.9


User provided reference genes

Program Settings