Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 1.2e-83 313.2 167 100.0
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 1.5e-73 279.6 168 91.7
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 1.9e-63 246.1 178 79.8
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 8.7e-61 237.3 162 78.4
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 1.1e-58 230.3 178 75.8
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 4.5e-57 224.9 174 75.9
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 4.9e-56 221.5 173 74.0
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 3.7e-51 205.3 202 63.4
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 2.4e-50 202.6 167 71.3
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 1.0e-45 187.2 174 64.4
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 6.7e-45 184.5 205 57.6
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 1.9e-44 183.0 170 65.9
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 5.7e-44 181.4 160 62.5
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 9.7e-44 180.6 205 57.1
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 1.8e-42 176.4 189 59.3
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 3.4e-41 172.2 199 54.8
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 4.5e-33 145.2 153 52.3
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 2.9e-32 142.5 160 50.6
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 3.2e-31 139.0 152 56.6
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 4.2e-31 138.7 152 55.9
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.6e-30 136.7 152 52.0
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 7.9e-30 134.4 156 48.7
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 1.4e-29 133.7 152 52.6
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 1.8e-29 133.3 170 51.2
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 1.8e-29 133.3 158 51.3
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 5.1e-29 131.7 149 53.7
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 5.1e-29 131.7 152 52.6
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 6.7e-29 131.3 163 49.1
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 8.8e-29 131.0 152 52.6
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 1.1e-28 130.6 151 53.6
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 1.5e-28 130.2 158 51.3
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 1.5e-28 130.2 151 49.7
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 2.0e-28 129.8 152 50.7
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 2.6e-28 129.4 151 52.3
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 3.3e-28 129.0 153 49.0
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 4.4e-28 128.6 181 47.0
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 4.4e-28 128.6 160 50.6
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 4.4e-28 128.6 148 50.7
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 4.4e-28 128.6 151 49.0
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 9.7e-28 127.5 162 51.2
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 9.7e-28 127.5 175 49.7
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 9.7e-28 127.5 166 45.2
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 2.2e-27 126.3 153 48.4
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 4.8e-27 125.2 166 47.6
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 6.3e-27 124.8 169 46.2
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 6.3e-27 124.8 162 44.4
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 8.2e-27 124.4 167 44.3
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 1.4e-26 123.6 153 47.1
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 1.4e-26 123.6 151 48.3
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 1.8e-26 123.2 156 44.9
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 2.4e-26 122.9 156 44.9
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 2.4e-26 122.9 153 47.1
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 3.1e-26 122.5 160 48.8
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 9.1e-26 120.9 172 45.3
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.2e-25 120.6 154 50.0
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 1.2e-25 120.6 152 48.0
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 1.5e-25 120.2 152 44.7
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 1.5e-25 120.2 152 48.7
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 2.0e-25 119.8 151 47.7
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 2.6e-25 119.4 152 45.4
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 3.4e-25 119.0 153 47.1
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 4.5e-25 118.6 158 46.2
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 4.5e-25 118.6 160 46.9
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 4.5e-25 118.6 156 46.8
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 5.9e-25 118.2 152 46.7
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 7.7e-25 117.9 153 48.4
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 1.7e-24 116.7 148 45.3
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 2.9e-24 115.9 152 50.7
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 2.9e-24 115.9 152 46.1
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 3.2e-23 112.5 155 45.8
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 5.5e-23 111.7 156 41.7
BraA03t14903Z Brassica rapa HOM05D006778 ORTHO05D008341 7.2e-23 111.3 155 51.0
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 6.1e-22 108.2 149 43.0
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 1.0e-21 107.5 160 42.5
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 1.8e-21 106.7 160 43.8
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 2.3e-21 106.3 166 43.4
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 3.0e-21 105.9 152 40.8
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 3.9e-21 105.5 152 41.4
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 5.7e-20 101.7 156 42.3
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 7.4e-20 101.3 157 43.3
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 6.3e-19 98.2 155 40.0
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 1.1e-18 97.4 162 40.1
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 1.2e-17 94.0 179 39.1
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 2.2e-16 89.7 158 43.7
BcaB05g23407 Brassica carinata HOM05D006778 ORTHO05D008341 1.9e-15 86.7 79 70.9
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 2.5e-15 86.3 158 34.8
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 3.2e-15 85.9 138 42.8
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 3.2e-15 85.9 153 38.6
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 9.4e-15 84.3 107 51.4
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 1.6e-14 83.6 171 32.7
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 8.0e-14 81.3 114 43.0
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 8.0e-14 81.3 114 43.0
BcaB07g32727 Brassica carinata HOM05D004750 ORTHO05D006207 1.8e-13 80.1 75 69.3
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 1.8e-13 80.1 152 38.8
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 8.8e-13 77.8 149 38.9
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 2.0e-12 76.6 124 42.7
BcaB02g06889 Brassica carinata HOM05D006778 ORTHO05D008341 2.0e-12 76.6 73 69.9
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 3.3e-12 75.9 151 34.4
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 4.4e-12 75.5 94 50.0
BcaC05g25005 Brassica carinata HOM05D002222 ORTHO05D002354 7.5e-12 74.7 73 67.1
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 6.3e-11 71.6 44 65.9
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.4e-10 70.5 75 53.3
BcaC05g24991 Brassica carinata HOM05D004750 ORTHO05D008341 2.4e-10 69.7 54 81.5
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 3.1e-10 69.3 153 32.0
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 4.1e-10 68.9 124 39.5
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 9.1e-10 67.8 145 35.2
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 1.2e-09 67.4 76 55.3
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 1.6e-09 67.0 71 56.3
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 3.5e-09 65.9 93 44.1
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 4.5e-09 65.5 155 34.2
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 4.5e-09 65.5 140 39.3
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 1.3e-08 63.9 103 42.7
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 6.5e-08 61.6 122 36.1
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 8.5e-08 61.2 89 47.2
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 7.2e-07 58.2 72 48.6
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 7.2e-07 58.2 72 48.6
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 7.2e-07 58.2 72 48.6
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 9.4e-07 57.8 72 48.6
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 4.7e-06 55.5 52 59.6


User provided reference genes

Program Settings