Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01248 Brassica carinata HOM05D006277 ORTHO05D007673 8.8e-208 726.9 405 100.0
BcaNung02006 Brassica carinata HOM05D006277 ORTHO05D007673 1.3e-166 590.1 406 86.5
C07p43080 Brassica napus HOM05D006277 ORTHO05D007673 4.1e-165 585.1 418 84.2
BolC7t44835H Brassica oleracea HOM05D006277 ORTHO05D007673 2.7e-164 582.4 418 84.0
Sp2g22750 Schrenkiella parvula HOM05D006277 ORTHO05D007673 5.4e-149 531.6 411 80.0
A06p35430 Brassica napus HOM05D006277 ORTHO05D007673 1.2e-148 530.4 423 77.1
BraA06t26466Z Brassica rapa HOM05D006277 ORTHO05D007673 3.3e-146 522.3 433 75.3
Thhalv10004336m.g Eutrema salsugineum HOM05D006277 ORTHO05D007673 5.1e-139 498.4 408 75.0
AL6G36240 Arabidopsis lyrata HOM05D006277 ORTHO05D007673 3.2e-117 426.0 458 60.9
Carub.0006s2249 Capsella rubella HOM05D006277 ORTHO05D007673 4.2e-117 425.6 415 66.5
AT5G24630 Arabidopsis thaliana HOM05D006277 ORTHO05D007673 2.4e-112 409.8 456 61.8
CARHR188820 Cardamine hirsuta HOM05D006277 ORTHO05D007673 2.6e-103 379.8 413 63.9
Aa31LG11G3890 Aethionema arabicum HOM05D006277 ORTHO05D007673 1.5e-98 364.0 434 58.5
C09p07160 Brassica napus HOM05D000010 ORTHO05D000063 9.1e-88 328.2 387 59.4
THA.LOC104803317 Tarenaya hassleriana HOM05D006277 ORTHO05D007673 4.8e-81 305.8 407 53.8
A09p06430 Brassica napus HOM05D000010 ORTHO05D000063 2.0e-66 257.3 199 76.9
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.0e-66 257.3 266 60.9
Cpa.g.sc3.186 Carica papaya HOM05D006277 ORTHO05D007673 9.5e-53 211.8 417 43.4
Gohir.A08G106400 Gossypium hirsutum HOM05D006277 ORTHO05D007673 3.1e-51 206.8 414 41.1
Gorai.004G126300 Gossypium raimondii HOM05D006277 ORTHO05D007673 1.2e-50 204.9 414 41.1
Thecc.03G212000 Theobroma cacao HOM05D006277 ORTHO05D007673 8.3e-49 198.7 412 40.5
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 1.4e-48 198.0 227 58.6
Sabra12G0000500 Salix brachista HOM05D006277 ORTHO05D007673 2.4e-48 197.2 419 41.1
COL.COLO4_14399 Corchorus olitorius HOM05D006277 ORTHO05D007673 7.0e-48 195.7 423 41.4
Potri.012G004700 Populus trichocarpa HOM05D006277 ORTHO05D007673 7.0e-48 195.7 420 40.7
QL09p006002 Quercus lobata HOM05D006277 ORTHO05D007673 4.6e-47 193.0 447 39.4
Medtr3g093330 Medicago truncatula HOM05D006277 ORTHO05D007673 6.0e-47 192.6 418 38.5
Sabra12G0006800 Salix brachista HOM05D006277 ORTHO05D007673 1.3e-46 191.4 420 41.0
GSVIVG01038680001 Vitis vinifera HOM05D006277 ORTHO05D007673 1.3e-46 191.4 424 40.8
vmacro06474 Vaccinium macrocarpon HOM05D006277 ORTHO05D007673 6.6e-46 189.1 455 37.6
Rhsim03G0218400 Rhododendron simsii HOM05D006277 ORTHO05D007673 1.5e-45 188.0 438 40.6
FvH4_7g33320 Fragaria vesca HOM05D006277 ORTHO05D007673 7.3e-45 185.7 422 41.0
FAN01G0327 Fragaria x ananassa HOM05D006277 ORTHO05D007673 7.3e-45 185.7 422 41.0
Atru.chr12.2501 Acer truncatum HOM05D006277 ORTHO05D007673 1.2e-44 184.9 431 39.2
Duzib205G1288 Durio zibethinus HOM05D006277 ORTHO05D007673 3.6e-44 183.3 413 40.7
Sc19g0000370 Simmondsia chinensis HOM05D006277 ORTHO05D007673 3.6e-44 183.3 429 39.9
MSTRG.26953 Avicennia marina HOM05D006277 ORTHO05D007673 6.2e-44 182.6 420 39.3
Glyma.06G139100 Glycine max HOM05D006277 ORTHO05D007673 6.2e-44 182.6 420 41.4
EL10Ac3g05132 Beta vulgaris HOM05D006277 ORTHO05D007673 1.4e-43 181.4 422 40.0
Dinv29192 Davidia involucrata HOM05D006277 ORTHO05D007673 1.4e-43 181.4 426 39.4
FAN10G3443 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.4e-43 181.4 422 40.3
VMungo1309G1324 Vigna mungo HOM05D006277 ORTHO05D007673 1.4e-43 181.4 422 39.3
Phvul.009G040200 Phaseolus vulgaris HOM05D006277 ORTHO05D007673 8.9e-43 178.7 424 40.1
Ca_16838_v3 Cicer arietinum L. HOM05D006277 ORTHO05D007673 1.2e-42 178.3 453 39.1
Lj1g0014471 Lotus japonicus HOM05D006277 ORTHO05D007673 1.2e-42 178.3 426 39.2
RcHm_v2.0_Chr1g0383301 Rosa chinensis HOM05D006277 ORTHO05D007673 1.2e-42 178.3 438 39.0
Hund09753 Selenicereus undatus HOM05D006277 ORTHO05D007673 1.5e-42 177.9 390 39.0
arahy.Tifrunner.gnm1.ann1.YJ5L14 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.6e-42 177.2 435 39.8
CSS0047728 Camellia sinensis var. sinensis HOM05D006277 ORTHO05D007673 7.5e-42 175.6 422 39.1
arahy.Tifrunner.gnm1.ann1.NYS2P6 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.7e-41 174.5 435 39.5
SGA_v2.0_scaffold18G08496 Striga asiatica HOM05D006277 ORTHO05D007673 2.9e-41 173.7 415 36.4
Manes.18G108300 Manihot esculenta HOM05D006277 ORTHO05D007673 4.9e-41 172.9 417 38.6
arahy.Tifrunner.gnm1.ann1.VE49IY Arachis hypogaea HOM05D006277 ORTHO05D007673 3.2e-40 170.2 437 39.1
FAN10G1913 Fragaria x ananassa HOM05D006277 ORTHO05D007673 3.2e-40 170.2 428 39.0
Atru.chr12.2525 Acer truncatum HOM05D006277 ORTHO05D007673 3.5e-39 166.8 420 38.3
CiPaw.06G038300 Carya illinoinensis HOM05D006277 ORTHO05D007673 4.6e-39 166.4 369 40.7
PGR142G2769 Punica granatum HOM05D006277 ORTHO05D007673 4.6e-39 166.4 433 38.8
SalBow4G0692 Salvia bowleyana HOM05D006277 ORTHO05D007673 6.0e-39 166.0 436 36.5
MD07G1303400 Malus domestica HOM05D006277 ORTHO05D007673 1.3e-38 164.9 279 45.2
Psat6g243000 Pisum sativum HOM05D006277 ORTHO05D007673 3.0e-38 163.7 423 36.9
Migut.F00123 Erythranthe guttata HOM05D006277 ORTHO05D007673 3.9e-38 163.3 448 35.9
Haze_00334 Corylus avellana HOM05D006277 ORTHO05D007673 8.6e-38 162.2 508 34.4
Lalb_Chr23g0272041 Lupinus albus HOM05D006277 ORTHO05D007673 1.1e-37 161.8 430 37.7
Glyma.04G225700 Glycine max HOM05D006277 ORTHO05D007673 7.3e-37 159.1 409 37.9
TPR.G35912 Trifolium pratense HOM05D006277 ORTHO05D007673 7.3e-37 159.1 443 35.4
TWI59G0797 Tripterygium wilfordii HOM05D006277 ORTHO05D007673 7.3e-37 159.1 285 42.5
Sopen03g027470 Solanum pennellii HOM05D006277 ORTHO05D007673 9.5e-37 158.7 433 37.4
AUR62005949 Chenopodium quinoa HOM05D006277 ORTHO05D007673 1.6e-36 157.9 405 37.8
CAN.G303.58 Capsicum annuum HOM05D006277 ORTHO05D007673 2.8e-36 157.1 427 36.8
CANSAT21G1902 Cannabis sativa HOM05D006277 ORTHO05D007673 3.6e-36 156.8 418 37.6
MD01G1231400 Malus domestica HOM05D006277 ORTHO05D007673 3.6e-36 156.8 408 37.7
Lsat_1_v5_gn_2_135460 Lactuca sativa HOM05D006277 ORTHO05D007673 6.2e-36 156.0 354 41.2
PGSC0003DMG400000548 Solanum tuberosum HOM05D006277 ORTHO05D007673 1.1e-35 155.2 431 38.1
TAR626G1328 Trochodendron aralioides HOM05D006277 ORTHO05D007673 1.1e-35 155.2 405 36.3
FAN03G1266 Fragaria x ananassa HOM05D006277 ORTHO05D007673 1.8e-35 154.5 344 40.4
Peaxi162Scf01026g00268 Petunia axillaris HOM05D006277 ORTHO05D007673 2.0e-34 151.0 422 37.2
AUR62028116 Chenopodium quinoa HOM05D006277 ORTHO05D007673 2.6e-34 150.6 408 35.8
Ciclev10005393m.g Citrus clementina HOM05D006277 ORTHO05D007673 4.4e-34 149.8 285 41.4
Cc02_g00600 Coffea canephora HOM05D006277 ORTHO05D007673 4.4e-34 149.8 419 37.7
HanXRQChr04g0117941 Helianthus annuus HOM05D006277 ORTHO05D007673 5.8e-34 149.4 228 49.1
Prupe.2G322100 Prunus persica HOM05D006277 ORTHO05D007673 1.7e-33 147.9 189 53.4
ECA238G0260 Erigeron canadensis HOM05D006277 ORTHO05D007673 3.2e-32 143.7 230 46.1
Solyc03g079950.4 Solanum lycopersicum HOM05D006277 ORTHO05D007673 3.2e-32 143.7 423 36.6
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 7.8e-31 139.0 237 44.7
Sed0010003 Sechium edule HOM05D006277 ORTHO05D007673 2.3e-30 137.5 412 35.2
SEGI_26440 Sequoiadendron giganteum HOM05D006277 ORTHO05D007673 2.3e-30 137.5 401 33.7
PSO384G3009 Papaver somniferum HOM05D006277 ORTHO05D007673 3.9e-30 136.7 303 41.3
CsaV3_2G019700 Cucumis sativus L. HOM05D006277 ORTHO05D007673 5.1e-30 136.3 432 35.9
Cfa016128 Carpinus fangiana HOM05D006277 ORTHO05D007673 6.6e-30 136.0 303 38.6
Nitab4.5_0007121g0020 Nicotiana tabacum HOM05D006277 ORTHO05D007673 6.6e-30 136.0 379 38.0
Actinidia08720 Actinidia chinensis HOM05D006277 ORTHO05D007673 1.1e-29 135.2 281 42.0
ClCG07G009750 Citrullus lanatus HOM05D006277 ORTHO05D007673 1.1e-29 135.2 432 36.1
Nitab4.5_0000021g0190 Nicotiana tabacum HOM05D006277 ORTHO05D007673 1.1e-29 135.2 340 40.0
CDE02G3091 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 3.3e-29 133.7 222 44.6
AUR62030650 Chenopodium quinoa HOM05D006277 ORTHO05D007673 3.3e-29 133.7 221 46.2
MELO3C023191.2 Cucumis melo HOM05D006277 ORTHO05D007673 7.3e-29 132.5 338 38.2
Eucgr.K00479 Eucalyptus grandis HOM05D006277 ORTHO05D007673 7.3e-29 132.5 350 37.1
Gohir.D08G117800 Gossypium hirsutum HOM05D006277 ORTHO05D007673 7.3e-29 132.5 284 39.1
PSO063G0207 Papaver somniferum HOM05D006277 ORTHO05D007673 1.2e-28 131.7 404 35.1
arahy.Tifrunner.gnm1.ann1.T9XRV5 Arachis hypogaea HOM05D006277 ORTHO05D007673 1.6e-28 131.3 273 42.1
LjContig00312_ERROPOS870357g0003049 Lotus japonicus HOM05D006277 ORTHO05D007673 2.1e-28 131.0 298 39.9
Os02g0147100 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 4.0e-27 126.7 349 32.7
HPP92_017121 Vanilla planifolia HOM05D006277 ORTHO05D007673 4.0e-27 126.7 230 40.9
PSO170G0956 Papaver somniferum HOM05D006277 ORTHO05D007673 2.0e-26 124.4 404 33.4
arahy.Tifrunner.gnm1.ann1.Z5WHM0 Arachis hypogaea HOM05D006277 ORTHO05D007673 2.6e-26 124.0 398 35.2
HPP92_017116 Vanilla planifolia HOM05D006277 ORTHO05D007673 2.2e-25 120.9 279 36.9
DCAR_010558 Daucus carota HOM05D006277 ORTHO05D007673 2.9e-25 120.6 427 32.8
Oeu010718.2 Olea europaea HOM05D006277 ORTHO05D007673 1.4e-24 118.2 509 31.0
Os02g0147700 Oryza sativa ssp. japonica HOM05D006277 ORTHO05D007673 1.9e-24 117.9 401 31.2
MBI16_g10337_MAGBIO Magnolia biondii HOM05D006277 ORTHO05D007673 7.1e-24 115.9 294 36.7
Aqoxy7G02781 Aquilegia oxysepala HOM05D006277 ORTHO05D007673 2.1e-23 114.4 405 30.1
ATR0626G063 Amborella trichopoda HOM05D006277 ORTHO05D007673 1.1e-21 108.6 291 32.6
Zm00001eb232230 Zea mays HOM05D006277 ORTHO05D007673 3.3e-21 107.1 262 38.2
Mapoly0143s0029 Marchantia polymorpha HOM05D006277 ORTHO05D007673 4.3e-21 106.7 183 41.0
Pp3c7_3940 Physcomitrium patens HOM05D006277 ORTHO05D007673 4.0e-19 100.1 196 39.8
Pp3c11_21910 Physcomitrium patens HOM05D006277 ORTHO05D007673 9.9e-18 95.5 212 35.8
AagrBONN_evm.TU.Sc2ySwM_362.1883 Anthoceros agrestis HOM05D006277 ORTHO05D007673 1.7e-17 94.7 213 39.9
PSO384G0555 Papaver somniferum HOM05D006277 ORTHO05D007673 5.4e-16 89.7 161 45.3
Potri.015G000701 Populus trichocarpa HOM05D006277 ORTHO05D007673 5.1e-14 83.2 76 60.5
CBR_g24064 Chara braunii HOM05D006277 ORTHO05D007673 1.5e-13 81.6 233 33.0
Nn7g37003 Nelumbo nucifera HOM05D006277 ORTHO05D007673 4.3e-13 80.1 276 34.8
CBR_g39579 Chara braunii HOM05D000601 ORTHO05D007673 8.1e-12 75.9 123 38.2
CiPaw.10G123600 Carya illinoinensis HOM05D006277 ORTHO05D007673 2.0e-10 71.2 72 56.9
CBR_g31160 Chara braunii HOM05D006277 ORTHO05D007673 2.0e-10 71.2 157 36.9
Nn5g26949 Nelumbo nucifera HOM05D006277 ORTHO05D007673 3.8e-09 67.0 45 66.7
CDE06G1557 Ceratophyllum demersum HOM05D006277 ORTHO05D007673 4.2e-08 63.5 105 45.7


User provided reference genes

Program Settings