Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 1.6e-95 352.8 183 100.0
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 1.5e-85 319.7 184 91.3
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 1.9e-85 319.3 185 90.8
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 3.3e-85 318.5 185 90.3
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 3.6e-84 315.1 185 90.3
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 3.6e-84 315.1 185 90.3
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 3.0e-83 312.0 184 90.2
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 2.5e-77 292.4 184 83.7
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 2.5e-77 292.4 184 83.7
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 7.3e-77 290.8 184 83.2
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 1.6e-76 289.7 185 83.2
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 6.1e-76 287.7 185 83.2
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 3.7e-73 278.5 184 82.1
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 2.4e-72 275.8 186 81.2
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 6.6e-70 267.7 183 77.6
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 6.6e-70 267.7 183 77.6
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 2.1e-68 262.7 186 77.4
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 8.0e-68 260.8 183 76.0
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 8.0e-68 260.8 183 76.0
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 5.8e-66 254.6 186 76.3
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 5.8e-58 228.0 193 70.5
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 9.2e-48 194.1 187 63.1
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 7.8e-47 191.0 199 59.3
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 1.5e-45 186.8 199 57.3
CARHR200230 Cardamine hirsuta HOM05D006285 ORTHO05D007249 9.0e-43 177.6 175 64.0
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 1.5e-37 160.2 182 53.3
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 1.9e-37 159.8 188 55.9
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 1.9e-37 159.8 188 55.9
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 1.9e-37 159.8 194 50.5
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 4.3e-37 158.7 184 54.9
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 1.3e-36 157.1 193 52.3
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 8.1e-36 154.5 191 49.7
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 3.1e-35 152.5 189 48.7
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 4.0e-35 152.1 193 51.3
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 2.0e-34 149.8 193 50.8
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 3.4e-34 149.1 208 47.1
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 1.3e-33 147.1 190 49.5
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 2.2e-33 146.4 192 48.4
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 2.9e-33 146.0 192 50.0
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 1.4e-32 143.7 185 48.1
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 9.3e-32 141.0 190 46.3
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 2.7e-31 139.4 190 45.8
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 3.5e-31 139.0 193 49.2
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 3.5e-31 139.0 187 48.7
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 7.9e-31 137.9 195 45.6
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 1.8e-30 136.7 212 43.9
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 1.8e-30 136.7 189 46.0
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 1.8e-30 136.7 189 46.0
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 3.9e-30 135.6 198 46.5
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 8.7e-30 134.4 186 46.8
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 1.1e-29 134.0 191 47.6
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 1.9e-29 133.3 183 47.0
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 5.6e-29 131.7 190 46.3
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 5.6e-29 131.7 185 45.4
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 9.6e-29 131.0 194 43.8
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 1.3e-28 130.6 192 45.8
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.8e-28 129.4 200 44.0
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 2.8e-28 129.4 188 46.3
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 2.8e-28 129.4 192 44.8
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 3.7e-28 129.0 203 40.9
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 3.7e-28 129.0 186 46.8
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 6.2e-28 128.3 182 45.6
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 1.8e-27 126.7 187 46.0
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.4e-27 126.3 184 46.7
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 3.1e-27 125.9 183 43.7
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 5.3e-27 125.2 204 42.2
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 9.0e-27 124.4 193 42.5
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 2.0e-26 123.2 186 46.2
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 4.5e-26 122.1 201 45.3
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 1.3e-25 120.6 203 42.4
Cpa.g.sc207.10 Carica papaya HOM05D006285 ORTHO05D007249 3.8e-25 119.0 177 44.6
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 6.4e-25 118.2 187 43.9
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 1.9e-24 116.7 188 45.7
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 4.2e-24 115.5 199 42.2
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 7.1e-24 114.8 183 44.3
Manes.08G102800 Manihot esculenta HOM05D006285 ORTHO05D007249 6.0e-23 111.7 148 46.6
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 7.9e-23 111.3 185 40.5
Gohir.A01G021000 Gossypium hirsutum HOM05D006285 ORTHO05D007249 1.0e-22 110.9 128 55.5
Oeu019430.1 Olea europaea HOM05D006285 ORTHO05D007249 6.7e-22 108.2 162 43.8
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 1.1e-21 107.5 185 41.1
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 2.4e-19 99.8 192 40.1
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 3.1e-19 99.4 147 45.6
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 4.0e-19 99.0 185 40.5
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 9.0e-19 97.8 189 38.1
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 7.6e-18 94.7 189 41.3
TWI36G1029 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 1.3e-17 94.0 150 42.0
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 4.9e-17 92.0 211 36.5
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 6.5e-17 91.7 178 41.0
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 1.4e-16 90.5 175 40.0
Nn4g22189 Nelumbo nucifera HOM05D006285 ORTHO05D007249 1.4e-16 90.5 141 40.4
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 1.9e-16 90.1 209 35.9
ECA233G3183 Erigeron canadensis HOM05D006285 ORTHO05D007249 2.5e-16 89.7 160 40.6
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 2.7e-15 86.3 177 32.8
SalBow2G0692 Salvia bowleyana HOM05D006285 ORTHO05D007249 2.7e-15 86.3 129 45.0
MBI07_g36277_MAGBIO Magnolia biondii HOM05D006285 ORTHO05D007249 6.0e-15 85.1 183 36.6
FAN07G2449 Fragaria x ananassa HOM05D006285 ORTHO05D007249 1.0e-14 84.3 203 35.5
Ah.03g135710 Amaranthus hybridus HOM05D000002 ORTHO05D000047 3.9e-14 82.4 175 36.0
FAN12G2625 Fragaria x ananassa HOM05D006285 ORTHO05D007249 3.9e-14 82.4 202 37.6
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 3.9e-14 82.4 203 34.5
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 5.1e-14 82.0 156 38.5
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 5.1e-14 82.0 194 35.1
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 1.1e-13 80.9 201 36.8
CDE02G4729 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 2.5e-13 79.7 149 35.6
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 2.5e-13 79.7 202 35.1
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 2.5e-13 79.7 198 34.3
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 3.3e-13 79.3 179 34.1
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 4.3e-13 79.0 197 36.5
Nn3g16318 Nelumbo nucifera HOM05D006285 ORTHO05D007249 9.7e-13 77.8 171 32.2
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 2.2e-12 76.6 176 35.8
Sc11g0000190 Simmondsia chinensis HOM05D006285 ORTHO05D007249 2.2e-12 76.6 129 40.3
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 2.4e-11 73.2 130 42.3
Oeu055473.1 Olea europaea HOM05D006285 ORTHO05D007249 4.1e-11 72.4 183 34.4
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 5.3e-11 72.0 150 37.3
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 2.6e-10 69.7 209 28.7
SEGI_20867 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 4.5e-10 68.9 104 45.2
AUR62028862 Chenopodium quinoa HOM05D006285 ORTHO05D007249 3.2e-08 62.8 125 33.6
SEGI_23736 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 5.5e-08 62.0 85 43.5
ClCG07G011740 Citrullus lanatus HOM05D006285 ORTHO05D007249 1.6e-07 60.5 92 41.3
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.1e-07 60.1 97 41.2
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 2.1e-07 60.1 97 41.2
Gohir.A05G034800 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.7e-07 59.7 98 41.8
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 7.9e-07 58.2 176 31.8
Oeu003277.1 Olea europaea HOM05D006285 ORTHO05D007249 1.0e-06 57.8 189 31.7
ECA236G0223 Erigeron canadensis HOM05D001047 ORTHO05D000768 1.4e-06 57.4 81 45.7
GSVIVG01023256001 Vitis vinifera HOM05D001047 ORTHO05D000768 1.8e-06 57.0 84 42.9
Os04g0395800 Oryza sativa ssp. japonica HOM05D006285 ORTHO05D007249 3.0e-06 56.2 81 45.7
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 3.9e-06 55.8 83 42.2
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 3.9e-06 55.8 185 30.8
Zm00001eb084980 Zea mays HOM05D006285 ORTHO05D007249 3.9e-06 55.8 82 42.7
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 5.1e-06 55.5 83 42.2
Gohir.A08G246300 Gossypium hirsutum HOM05D001047 ORTHO05D000768 6.7e-06 55.1 108 38.9
Aqoxy3G01789 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 8.8e-06 54.7 88 43.2


User provided reference genes

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