Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 1.2e-43 179.5 92 100.0
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 1.3e-42 176.0 92 97.8
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 2.9e-42 174.9 92 96.7
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 2.9e-42 174.9 92 96.7
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 6.1e-40 167.2 92 91.3
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 2.0e-38 162.2 93 91.4
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 2.6e-38 161.8 93 91.4
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 3.3e-38 161.4 92 89.1
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 1.8e-36 155.6 92 81.5
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 2.4e-36 155.2 92 84.8
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.1e-36 154.8 92 83.7
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 4.1e-36 154.5 91 87.9
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 9.1e-36 153.3 92 80.4
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 9.1e-36 153.3 92 80.4
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 3.5e-35 151.4 92 82.6
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 3.5e-35 151.4 92 80.4
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 5.9e-35 150.6 92 81.5
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 7.7e-35 150.2 92 79.3
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 1.0e-34 149.8 93 82.8
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.0e-34 149.8 93 83.9
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 2.2e-34 148.7 93 82.8
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 2.2e-34 148.7 92 80.4
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.2e-34 148.7 92 79.3
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.2e-34 148.7 92 79.3
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 2.2e-34 148.7 92 80.4
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 5.0e-34 147.5 82 87.8
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 8.5e-34 146.7 93 81.7
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 8.5e-34 146.7 92 78.3
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 8.5e-34 146.7 92 77.2
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 1.1e-33 146.4 92 78.3
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.5e-33 146.0 91 76.9
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 1.5e-33 146.0 95 78.9
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 3.2e-33 144.8 91 75.8
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 3.2e-33 144.8 94 78.7
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 4.2e-33 144.4 92 80.4
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 4.2e-33 144.4 93 81.7
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 4.2e-33 144.4 92 78.3
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 5.5e-33 144.1 92 76.1
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 7.2e-33 143.7 90 78.9
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 7.2e-33 143.7 94 77.7
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 7.2e-33 143.7 94 78.7
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 9.4e-33 143.3 92 77.2
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 9.4e-33 143.3 94 74.5
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 1.6e-32 142.5 93 79.6
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.6e-32 142.5 94 77.7
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.6e-32 142.5 94 77.7
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 1.6e-32 142.5 92 77.2
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.1e-32 142.1 95 76.8
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 2.7e-32 141.7 91 76.9
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 2.7e-32 141.7 93 78.5
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 2.7e-32 141.7 92 76.1
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 3.6e-32 141.4 95 77.9
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 3.6e-32 141.4 92 77.2
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 4.7e-32 141.0 93 76.3
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 6.1e-32 140.6 94 76.6
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 8.0e-32 140.2 94 75.5
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 1.0e-31 139.8 92 76.1
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 1.4e-31 139.4 93 78.5
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 1.4e-31 139.4 92 76.1
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 1.4e-31 139.4 94 77.7
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 1.4e-31 139.4 94 75.5
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 1.8e-31 139.0 93 76.3
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 2.3e-31 138.7 91 75.8
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 2.3e-31 138.7 92 76.1
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 3.0e-31 138.3 92 76.1
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 3.0e-31 138.3 94 72.3
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 3.0e-31 138.3 94 72.3
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 3.0e-31 138.3 92 75.0
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 3.0e-31 138.3 92 75.0
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 4.0e-31 137.9 92 73.9
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 4.0e-31 137.9 92 73.9
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 4.0e-31 137.9 92 73.9
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.0e-31 137.9 79 83.5
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 5.2e-31 137.5 92 75.0
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 5.2e-31 137.5 94 77.7
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 6.7e-31 137.1 93 76.3
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 6.7e-31 137.1 92 73.9
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 8.8e-31 136.7 94 71.3
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 1.2e-30 136.3 92 75.0
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 75.3
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.0e-30 135.6 91 74.7
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 2.0e-30 135.6 93 75.3
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 2.6e-30 135.2 92 71.7
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 2.6e-30 135.2 94 71.3
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 2.6e-30 135.2 93 71.0
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 3.3e-30 134.8 94 74.5
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 3.3e-30 134.8 92 71.7
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 3.3e-30 134.8 94 72.3
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 3.3e-30 134.8 93 73.1
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 4.4e-30 134.4 92 73.9
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 4.4e-30 134.4 92 73.9
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 4.4e-30 134.4 95 73.7
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 5.7e-30 134.0 95 73.7
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 5.7e-30 134.0 93 73.1
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 5.7e-30 134.0 94 73.4
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 5.7e-30 134.0 91 71.4
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 5.7e-30 134.0 95 73.7
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 7.5e-30 133.7 93 72.0
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 7.5e-30 133.7 91 68.1
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 9.7e-30 133.3 91 72.5
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 1.3e-29 132.9 87 73.6
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 1.3e-29 132.9 94 73.4
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 1.3e-29 132.9 91 68.1
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 2.2e-29 132.1 94 73.4
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 2.8e-29 131.7 93 67.7
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 2.8e-29 131.7 94 72.3
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.8e-29 131.7 93 68.8
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 3.7e-29 131.3 94 72.3
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 4.8e-29 131.0 94 72.3
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 4.8e-29 131.0 93 71.0
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 4.8e-29 131.0 92 70.7
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 4.8e-29 131.0 94 71.3
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 6.3e-29 130.6 93 67.7
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 1.1e-28 129.8 93 73.1
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 1.1e-28 129.8 94 71.3
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.4e-28 129.4 93 71.0
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 1.4e-28 129.4 90 72.2
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.8e-28 129.0 93 72.0
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 2.4e-28 128.6 80 73.8
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 2.4e-28 128.6 84 71.4
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.4e-28 128.6 93 72.0
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 3.1e-28 128.3 90 70.0
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 3.1e-28 128.3 86 69.8
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 4.1e-28 127.9 94 69.1
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 5.3e-28 127.5 92 68.5
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 9.1e-28 126.7 91 70.3
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 9.1e-28 126.7 90 70.0
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 1.2e-27 126.3 91 63.7
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 1.2e-27 126.3 90 67.8
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 2.7e-27 125.2 93 67.7
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 2.7e-27 125.2 90 66.7
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 3.5e-27 124.8 91 65.9
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.3e-26 122.9 88 67.0
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 2.2e-26 122.1 93 63.4
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 2.9e-26 121.7 94 62.8
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 5.0e-26 120.9 94 61.7
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 8.5e-26 120.2 93 65.6
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 1.1e-25 119.8 94 63.8
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 1.1e-25 119.8 93 66.7
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 1.5e-25 119.4 94 62.8
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 1.5e-25 119.4 93 64.5
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 1.5e-25 119.4 93 64.5
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 4.2e-25 117.9 90 64.4
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 1.2e-24 116.3 82 75.6
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 8.0e-24 113.6 94 63.8
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 8.0e-24 113.6 90 62.2
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 8.0e-24 113.6 81 71.6
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 1.4e-23 112.8 82 70.7
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 2.3e-23 112.1 84 71.4
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 4.0e-23 111.3 78 69.2
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 5.2e-23 110.9 101 59.4
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 1.5e-22 109.4 91 58.2
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 7.5e-22 107.1 97 57.7
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 2.2e-21 105.5 91 58.2
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.8e-20 102.4 74 64.9
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 5.4e-20 100.9 79 64.6
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 2.7e-19 98.6 65 73.8
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 1.3e-18 96.3 81 63.0
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 3.8e-18 94.7 92 53.3
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 6.5e-18 94.0 61 72.1
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 4.7e-16 87.8 90 47.8
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 2.3e-15 85.5 72 59.7
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 8.8e-15 83.6 73 49.3
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.5e-14 82.8 68 55.9
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 4.4e-14 81.3 99 44.4
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 5.7e-14 80.9 95 43.2
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 4.5e-11 71.2 72 56.9
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 1.0e-10 70.1 52 69.2
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 2.9e-10 68.6 71 42.3
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 1.9e-09 65.9 39 71.8
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.9e-09 65.9 72 44.4
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.2e-08 63.2 73 38.4
SEGI_01546 Sequoiadendron giganteum HOM05D007557 ORTHO05D009573 3.0e-07 58.5 69 42.0


User provided reference genes

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