Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 0.0e+00 1208.7 665 100.0
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 5.6e-212 741.5 443 86.9
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 9.6e-212 740.7 443 86.7
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.1e-210 737.3 444 86.9
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 7.6e-209 731.1 437 86.5
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.4e-202 710.3 444 83.3
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 2.2e-184 649.8 443 75.4
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 2.9e-184 649.4 443 75.4
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 5.0e-184 648.7 450 75.1
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 9.4e-183 644.4 443 74.9
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 1.2e-177 627.5 441 73.7
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 7.2e-159 565.1 443 67.3
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 9.5e-159 564.7 437 63.4
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 3.0e-157 559.7 440 62.7
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 1.1e-154 551.2 435 62.8
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.6e-153 547.4 434 63.1
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.0e-153 547.0 429 63.9
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 2.0e-153 547.0 429 63.9
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.7e-152 543.9 442 59.7
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.5e-151 540.8 428 61.2
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.2e-150 537.7 429 62.7
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 3.6e-150 536.2 436 59.2
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 3.6e-150 536.2 440 60.0
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 1.8e-149 533.9 443 62.5
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 2.3e-149 533.5 436 60.8
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 3.4e-148 529.6 429 62.0
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 2.9e-147 526.6 431 61.5
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 3.7e-147 526.2 436 58.7
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 9.2e-146 521.5 436 58.0
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 3.5e-145 519.6 436 58.0
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 2.5e-143 513.5 445 57.5
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 3.3e-143 513.1 439 58.8
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 1.9e-138 497.3 461 56.6
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.2e-137 494.6 441 57.4
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 7.8e-137 491.9 435 57.9
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 3.9e-136 489.6 449 56.1
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 9.5e-135 485.0 439 57.2
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 1.2e-134 484.6 439 57.2
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.6e-134 484.2 441 56.2
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 6.8e-133 478.8 438 55.9
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 5.8e-132 475.7 439 56.7
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.4e-130 471.1 437 54.9
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 5.4e-130 469.2 441 55.6
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 9.2e-130 468.4 497 50.1
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 9.2e-130 468.4 437 54.7
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 9.2e-130 468.4 436 56.2
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 1.2e-129 468.0 447 55.0
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 6.0e-129 465.7 443 54.0
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 1.1e-127 461.5 443 52.8
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 5.6e-127 459.1 436 55.3
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 9.6e-127 458.4 446 53.1
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 1.4e-125 454.5 436 53.0
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 8.9e-125 451.8 469 51.0
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 2.6e-124 450.3 437 52.6
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 4.9e-123 446.0 438 52.1
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.1e-122 444.9 438 51.8
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.1e-122 444.9 439 53.1
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 3.5e-121 439.9 438 52.5
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 1.0e-120 438.3 444 50.9
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 6.6e-120 435.6 411 54.0
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 8.7e-120 435.3 436 52.3
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.1e-119 434.9 438 52.3
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.5e-119 434.5 436 54.4
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 4.3e-119 433.0 437 51.3
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 8.1e-118 428.7 432 50.2
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.4e-117 427.9 417 51.6
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 1.8e-117 427.6 438 51.6
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 2.4e-117 427.2 339 61.7
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 6.9e-117 425.6 436 49.3
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 2.6e-116 423.7 437 48.7
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 9.9e-116 421.8 452 50.7
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 1.7e-115 421.0 434 50.7
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 6.0e-113 412.5 436 49.5
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 1.3e-112 411.4 421 49.6
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 5.1e-112 409.5 436 49.8
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 1.9e-111 407.5 440 51.1
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.8e-110 402.9 327 58.4
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 6.2e-110 402.5 432 50.5
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.8e-109 401.0 436 50.2
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 3.1e-109 400.2 455 47.5
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 6.9e-109 399.1 436 48.2
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.6e-108 397.1 368 56.5
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 4.9e-107 392.9 325 56.9
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 7.1e-106 389.0 437 49.0
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 9.3e-106 388.7 428 48.8
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.6e-105 386.3 436 48.9
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 5.1e-104 382.9 298 62.4
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.1e-103 381.7 436 48.2
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 2.5e-103 380.6 328 58.8
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 4.3e-103 379.8 316 61.1
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 6.2e-102 375.9 411 48.2
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 2.6e-100 370.5 430 47.7
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 4.9e-99 366.3 434 46.8
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 6.5e-99 365.9 425 46.1
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 9.3e-98 362.1 373 49.3
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 7.6e-92 342.4 427 44.7
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 5.1e-88 329.7 444 43.5
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 5.9e-84 316.2 325 50.2
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 3.9e-80 303.5 248 59.7
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 1.3e-78 298.5 267 57.7
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.5e-76 291.6 304 52.3
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 3.9e-72 276.9 276 52.5
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 4.4e-71 273.5 332 43.7
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 8.5e-67 259.2 217 62.7
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 1.8e-56 224.9 399 31.8
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 7.7e-52 209.5 264 44.3
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 1.2e-49 202.2 402 29.6
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.8e-48 198.4 195 54.9
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.2e-47 195.7 404 29.5
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 4.9e-46 190.3 159 59.1
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 5.4e-45 186.8 111 86.5
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 1.3e-43 182.2 146 58.2
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 2.9e-43 181.0 392 28.1
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 3.3e-42 177.6 176 52.8
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 8.9e-40 169.5 406 29.8
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 7.5e-39 166.4 215 43.7
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 4.6e-36 157.1 399 25.1
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 7.8e-36 156.4 405 25.2
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 6.8e-32 143.3 111 61.3
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 4.9e-30 137.1 98 63.3
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 1.1e-29 136.0 118 55.9
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.0e-27 129.4 214 36.9
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 2.8e-25 121.3 136 47.8
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 1.2e-23 115.9 104 55.8
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 6.4e-22 110.2 131 46.6
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 9.2e-21 106.3 78 61.5
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 3.1e-16 91.3 193 34.2
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 3.2e-13 81.3 55 65.5
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 1.6e-12 79.0 65 56.9
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.7e-11 75.5 66 54.5
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 1.8e-08 65.5 142 28.9
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.8e-08 65.5 66 53.0
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 2.4e-08 65.1 164 25.0
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 4.0e-08 64.3 41 70.7
Lalb_Chr03g0025021 Lupinus albus HOM05D000001 ORTHO05D000003 4.0e-08 64.3 119 38.7
AagrBONN_evm.TU.Sc2ySwM_117.377 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.8e-08 63.5 101 32.7
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 3.4e-07 61.2 138 26.8
AagrBONN_evm.TU.Sc2ySwM_228.329__330 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-07 61.2 80 40.0
AagrBONN_evm.TU.Sc2ySwM_228.336 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-07 61.2 80 40.0
AagrBONN_evm.TU.Sc2ySwM_362.1339 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.4e-07 60.8 150 29.3
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 4.4e-07 60.8 50 56.0
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 4.4e-07 60.8 134 26.1
AagrBONN_evm.TU.Sc2ySwM_228.3424 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.6e-07 60.1 150 30.7
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 1.3e-06 59.3 41 63.4
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 1.3e-06 59.3 418 22.0
AagrBONN_evm.TU.Sc2ySwM_340.433 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.2e-06 58.5 57 43.9
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 2.2e-06 58.5 38 68.4
AUR62009402 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.2e-06 58.5 91 34.1
AUR62023085 Chenopodium quinoa HOM05D001779 ORTHO05D001753 2.2e-06 58.5 91 34.1
MD06G1168900 Malus domestica HOM05D000001 ORTHO05D009144 2.2e-06 58.5 81 33.3
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 2.2e-06 58.5 147 25.2
AagrBONN_evm.TU.Sc2ySwM_344.5642 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.9e-06 58.2 156 28.2
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 2.9e-06 58.2 133 27.1
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 2.9e-06 58.2 112 31.2
AagrBONN_evm.TU.Sc2ySwM_117.417 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.9e-06 57.4 100 33.0
AagrBONN_evm.TU.Sc2ySwM_228.427 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.9e-06 57.4 168 29.8
AagrBONN_evm.TU.Sc2ySwM_228.63 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.9e-06 57.4 150 29.3
AagrBONN_evm.TU.Sc2ySwM_344.3486 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.9e-06 57.4 149 28.2
AagrBONN_evm.TU.Sc2ySwM_344.4950 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.9e-06 57.4 74 40.5
AagrBONN_evm.TU.Sc2ySwM_344.5655 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.9e-06 57.4 149 29.5
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 4.9e-06 57.4 73 35.6
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 4.9e-06 57.4 73 35.6
MD03G1031200 Malus domestica HOM05D065642 ORTHO05D245032 4.9e-06 57.4 59 45.8
AagrBONN_evm.TU.Sc2ySwM_117.3896 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-06 57.0 155 29.7
AagrBONN_evm.TU.Sc2ySwM_228.5928 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-06 57.0 150 28.0
AagrBONN_evm.TU.Sc2ySwM_344.49 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-06 57.0 150 29.3
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 6.4e-06 57.0 147 25.2
DCAR_016813 Daucus carota HOM05D007937 ORTHO05D010000 6.4e-06 57.0 159 24.5
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 6.4e-06 57.0 77 32.5
SGA_v2.0_scaffold417G51245 Striga asiatica HOM05D000001 ORTHO05D000003 6.4e-06 57.0 63 46.0
AagrBONN_evm.TU.Sc2ySwM_117.456 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.4e-06 56.6 150 29.3
AagrBONN_evm.TU.Sc2ySwM_368.998 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.4e-06 56.6 149 28.2
AUR62013066 Chenopodium quinoa HOM05D000001 ORTHO05D000003 8.4e-06 56.6 69 43.5


User provided reference genes

Program Settings