Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00599 Brassica carinata HOM05D000528 ORTHO05D000999 1.2e-52 209.5 105 100.0
C01p03530 Brassica napus HOM05D000528 ORTHO05D000999 1.0e-35 153.3 83 94.0
BolC1t00342H Brassica oleracea HOM05D000528 ORTHO05D000999 1.0e-35 153.3 83 94.0
A01p03180 Brassica napus HOM05D000528 ORTHO05D000999 1.4e-35 152.9 79 97.5
BraA01t00303Z Brassica rapa HOM05D000528 ORTHO05D000999 1.4e-35 152.9 79 97.5
AL7G15780 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 2.0e-34 149.1 83 92.8
AT4G35380 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 2.0e-34 149.1 83 92.8
CARHR243700 Cardamine hirsuta HOM05D000528 ORTHO05D000999 5.7e-34 147.5 83 92.8
Sp7g33170 Schrenkiella parvula HOM05D000528 ORTHO05D000999 7.4e-34 147.1 83 92.8
Thhalv10024200m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 9.7e-34 146.7 83 91.6
Carub.0007s0493 Capsella rubella HOM05D000528 ORTHO05D000999 2.8e-33 145.2 83 90.4
Aa31LG6G12380 Aethionema arabicum HOM05D000528 ORTHO05D000999 4.8e-33 144.4 79 93.7
THA.LOC104819698 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 7.7e-31 137.1 80 86.2
Sabra09G0131600 Salix brachista HOM05D000528 ORTHO05D000999 5.7e-26 120.9 79 77.2
Sabra04G0140400 Salix brachista HOM05D000528 ORTHO05D000999 9.7e-26 120.2 87 71.3
Potri.009G169800 Populus trichocarpa HOM05D000528 ORTHO05D000999 1.7e-25 119.4 79 74.7
Duzib132G0712 Durio zibethinus HOM05D000528 ORTHO05D000999 6.3e-25 117.5 79 68.4
COL.COLO4_03851 Corchorus olitorius HOM05D000528 ORTHO05D000999 1.8e-24 115.9 79 69.6
Duzib248G0733 Durio zibethinus HOM05D000528 ORTHO05D000999 3.1e-24 115.2 79 68.4
Gorai.012G138200 Gossypium raimondii HOM05D000528 ORTHO05D000999 3.1e-24 115.2 79 69.6
TPR.G18631 Trifolium pratense HOM05D000528 ORTHO05D000999 7.0e-24 114.0 80 68.8
Ca_06507_v3 Cicer arietinum L. HOM05D000528 ORTHO05D000999 9.1e-24 113.6 81 67.9
Potri.004G208400 Populus trichocarpa HOM05D000528 ORTHO05D000999 9.1e-24 113.6 79 69.6
Gohir.A03G170000 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.2e-23 113.2 79 68.4
Gohir.D04G151500 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.6e-23 112.8 79 68.4
Glyma.14G000300 Glycine max HOM05D000528 ORTHO05D000999 2.0e-23 112.5 80 66.2
AL7G10100 Arabidopsis lyrata HOM05D000528 ORTHO05D000999 2.7e-23 112.1 79 65.8
Thhalv10024199m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 2.7e-23 112.1 79 65.8
THA.LOC104804077 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 2.7e-23 112.1 79 67.1
Gohir.D02G193100 Gossypium hirsutum HOM05D000528 ORTHO05D000999 4.5e-23 111.3 79 67.1
Gorai.005G215900 Gossypium raimondii HOM05D000528 ORTHO05D000999 4.5e-23 111.3 79 67.1
CARHR293970 Cardamine hirsuta HOM05D000528 ORTHO05D000999 5.9e-23 110.9 79 64.6
MD05G1143400 Malus domestica HOM05D000528 ORTHO05D000999 5.9e-23 110.9 79 65.8
TWI79G1344 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 5.9e-23 110.9 76 72.4
AT4G38200 Arabidopsis thaliana HOM05D000528 ORTHO05D000999 7.7e-23 110.5 79 64.6
BolC7t46797H Brassica oleracea HOM05D000528 ORTHO05D000999 7.7e-23 110.5 79 64.6
Carub.0007s0009 Capsella rubella HOM05D000528 ORTHO05D000999 7.7e-23 110.5 79 64.6
Cpa.g.c29182.2 Carica papaya HOM05D000528 ORTHO05D000999 7.7e-23 110.5 79 67.1
Glyma.02G312200 Glycine max HOM05D000528 ORTHO05D000999 7.7e-23 110.5 80 63.8
Aa31LG6G16910 Aethionema arabicum HOM05D000528 ORTHO05D000999 1.0e-22 110.2 79 65.8
Sp7g37550 Schrenkiella parvula HOM05D000528 ORTHO05D000999 1.0e-22 110.2 79 64.6
Duzib052G1203 Durio zibethinus HOM05D000528 ORTHO05D000999 1.3e-22 109.8 79 65.8
Medtr5g099310 Medicago truncatula HOM05D000528 ORTHO05D000999 1.3e-22 109.8 85 64.7
Prupe.8G182200 Prunus persica HOM05D000528 ORTHO05D000999 1.3e-22 109.8 79 67.1
SHI05799 Sapria himalayana HOM05D000528 ORTHO05D000999 1.3e-22 109.8 78 69.2
CANSAT25G0393 Cannabis sativa HOM05D000528 ORTHO05D000999 1.7e-22 109.4 80 67.5
BcaNung01999 Brassica carinata HOM05D000528 ORTHO05D000999 2.9e-22 108.6 79 62.0
BraA06t27780Z Brassica rapa HOM05D000528 ORTHO05D000999 2.9e-22 108.6 79 62.0
Gohir.D12G013000 Gossypium hirsutum HOM05D000528 ORTHO05D000999 5.0e-22 107.8 79 64.6
Gorai.008G013100 Gossypium raimondii HOM05D000528 ORTHO05D000999 5.0e-22 107.8 79 64.6
FvH4_2g17050 Fragaria vesca HOM05D000528 ORTHO05D000999 8.5e-22 107.1 79 65.8
FAN15G2552 Fragaria x ananassa HOM05D000528 ORTHO05D000999 8.5e-22 107.1 79 65.8
FAN24G2253 Fragaria x ananassa HOM05D000528 ORTHO05D000999 8.5e-22 107.1 79 65.8
FAN27G0212 Fragaria x ananassa HOM05D000528 ORTHO05D000999 8.5e-22 107.1 79 65.8
MD10G1143300 Malus domestica HOM05D000528 ORTHO05D000999 8.5e-22 107.1 79 64.6
Psat2g000400 Pisum sativum HOM05D000528 ORTHO05D000999 8.5e-22 107.1 80 65.0
LjContig00081g0024847 Lotus japonicus HOM05D000528 ORTHO05D000999 1.1e-21 106.7 80 62.5
Gorai.013G065100 Gossypium raimondii HOM05D000528 ORTHO05D000999 1.5e-21 106.3 79 65.8
Ciclev10027671m.g Citrus clementina HOM05D000528 ORTHO05D000999 2.5e-21 105.5 77 63.6
Gohir.D13G057801 Gossypium hirsutum HOM05D000528 ORTHO05D000999 2.5e-21 105.5 79 65.8
ClCG02G003230 Citrullus lanatus HOM05D000528 ORTHO05D000999 9.4e-21 103.6 77 61.0
QL11p056832 Quercus lobata HOM05D000528 ORTHO05D000999 9.4e-21 103.6 80 65.0
arahy.Tifrunner.gnm1.ann1.9EA0XY Arachis hypogaea HOM05D000528 ORTHO05D000999 1.2e-20 103.2 80 60.0
arahy.Tifrunner.gnm1.ann1.I95U6T Arachis hypogaea HOM05D000528 ORTHO05D000999 1.2e-20 103.2 80 60.0
MELO3C015692.2 Cucumis melo HOM05D000528 ORTHO05D000999 1.2e-20 103.2 77 61.0
CsaV3_7G002160 Cucumis sativus L. HOM05D000528 ORTHO05D000999 1.2e-20 103.2 77 61.0
vmacro10880 Vaccinium macrocarpon HOM05D000528 ORTHO05D000999 2.1e-20 102.4 77 66.2
Lalb_Chr10g0107731 Lupinus albus HOM05D000528 ORTHO05D000999 4.7e-20 101.3 80 61.2
PGR142G3048 Punica granatum HOM05D000528 ORTHO05D000999 8.0e-20 100.5 78 62.8
Sed0019498 Sechium edule HOM05D000528 ORTHO05D000999 1.0e-19 100.1 77 59.7
Dinv14186 Davidia involucrata HOM05D000528 ORTHO05D000999 1.4e-19 99.8 77 63.6
Actinidia32004 Actinidia chinensis HOM05D000528 ORTHO05D000999 4.0e-19 98.2 79 62.0
Cfa005397 Carpinus fangiana HOM05D000528 ORTHO05D000999 5.2e-19 97.8 75 64.0
Lalb_Chr04g0246891 Lupinus albus HOM05D000528 ORTHO05D000999 6.8e-19 97.4 79 58.2
Sed0020334 Sechium edule HOM05D000528 ORTHO05D000999 6.8e-19 97.4 77 57.1
Haze_01955 Corylus avellana HOM05D000528 ORTHO05D000999 8.8e-19 97.1 75 64.0
Actinidia26325 Actinidia chinensis HOM05D000528 ORTHO05D000999 1.2e-18 96.7 79 60.8
Lj5C170G20 Lonicera japonica HOM05D000528 ORTHO05D000999 1.2e-18 96.7 76 60.5
CiPaw.06G113900 Carya illinoinensis HOM05D000528 ORTHO05D000999 2.0e-18 95.9 81 59.3
CAN.G1645.12 Capsicum annuum HOM05D000528 ORTHO05D000999 2.6e-18 95.5 72 65.3
SalBow5G2253 Salvia bowleyana HOM05D000528 ORTHO05D000999 5.7e-18 94.4 81 60.5
SalBow5G3559 Salvia bowleyana HOM05D000528 ORTHO05D000999 5.7e-18 94.4 81 60.5
Hund00101 Selenicereus undatus HOM05D000528 ORTHO05D000999 5.7e-18 94.4 77 58.4
Peaxi162Scf00362g00022 Petunia axillaris HOM05D000528 ORTHO05D000999 9.8e-18 93.6 74 60.8
Sc08g0002040 Simmondsia chinensis HOM05D000528 ORTHO05D000999 9.8e-18 93.6 76 61.8
MSTRG.16960 Avicennia marina HOM05D000528 ORTHO05D000999 1.3e-17 93.2 79 58.2
Dinv41859 Davidia involucrata HOM05D005082 ORTHO05D006474 1.3e-17 93.2 76 60.5
Solyc01g112340.3 Solanum lycopersicum HOM05D000528 ORTHO05D000999 1.7e-17 92.8 72 62.5
Sopen01g054440 Solanum pennellii HOM05D000528 ORTHO05D000999 1.7e-17 92.8 72 62.5
Lsat_1_v5_gn_8_119540 Lactuca sativa HOM05D000528 ORTHO05D000999 2.2e-17 92.4 72 66.7
Ah.01g017710 Amaranthus hybridus HOM05D000528 ORTHO05D000999 4.8e-17 91.3 84 52.4
MSTRG.27607 Avicennia marina HOM05D000528 ORTHO05D000999 4.8e-17 91.3 72 62.5
SGA_v2.0_scaffold98G29311 Striga asiatica HOM05D000528 ORTHO05D000999 8.3e-17 90.5 79 57.0
EL10Ac9g21558 Beta vulgaris HOM05D000528 ORTHO05D000999 1.1e-16 90.1 77 53.2
GSVIVG01023854001 Vitis vinifera HOM05D000528 ORTHO05D000999 1.1e-16 90.1 74 58.1
SGA_v2.0_scaffold80G25807 Striga asiatica HOM05D000528 ORTHO05D000999 1.4e-16 89.7 85 56.5
unitig_748.g8067 Utricularia gibba HOM05D000528 ORTHO05D000999 1.8e-16 89.4 78 56.4
CSS0040076 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 2.4e-16 89.0 77 58.4
DCAR_005426 Daucus carota HOM05D000528 ORTHO05D000999 2.4e-16 89.0 72 59.7
Cc09_g10920 Coffea canephora HOM05D000528 ORTHO05D000999 4.1e-16 88.2 79 54.4
arahy.Tifrunner.gnm1.ann1.PIMS1B Arachis hypogaea HOM05D000528 ORTHO05D000999 5.4e-16 87.8 70 58.6
AUR62013198 Chenopodium quinoa HOM05D000528 ORTHO05D000999 5.4e-16 87.8 72 56.9
Migut.N01366 Erythranthe guttata HOM05D000528 ORTHO05D000999 5.4e-16 87.8 79 54.4
AUR62010209 Chenopodium quinoa HOM05D000528 ORTHO05D000999 7.0e-16 87.4 72 56.9
ECA233G2528 Erigeron canadensis HOM05D000528 ORTHO05D000999 7.0e-16 87.4 72 58.3
PSO541G5174 Papaver somniferum HOM05D000528 ORTHO05D000999 7.0e-16 87.4 74 56.8
PSO675G4154 Papaver somniferum HOM05D000528 ORTHO05D000999 7.0e-16 87.4 74 56.8
HanXRQChr14g0455161 Helianthus annuus HOM05D000528 ORTHO05D000999 2.7e-15 85.5 72 61.1
Aqoxy6G02996 Aquilegia oxysepala HOM05D000528 ORTHO05D000999 1.7e-14 82.8 84 46.4
Oeu025016.1 Olea europaea HOM05D000528 ORTHO05D000999 8.5e-14 80.5 62 62.9
Nn5g31050 Nelumbo nucifera HOM05D000528 ORTHO05D000999 1.1e-13 80.1 76 50.0
ATR0605G297 Amborella trichopoda HOM05D000528 ORTHO05D000999 8.0e-12 73.9 77 46.8
RcHm_v2.0_Chr6g0281241 Rosa chinensis HOM05D000528 ORTHO05D000999 2.0e-10 69.3 58 56.9
Zm00001eb206130 Zea mays HOM05D000528 ORTHO05D000999 2.6e-10 68.9 72 44.4
MBI01_g28405_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D000999 7.5e-10 67.4 82 41.5
Zm00001eb388040 Zea mays HOM05D000528 ORTHO05D000999 1.4e-08 63.2 72 41.7
HPP92_021916 Vanilla planifolia HOM05D000528 ORTHO05D000999 2.0e-07 59.3 76 36.8
Atru.chr5.3581 Acer truncatum HOM05D000528 ORTHO05D000999 3.5e-07 58.5 41 61.0
Gohir.A08G031500 Gossypium hirsutum HOM05D000528 ORTHO05D000999 3.5e-07 58.5 75 44.0
CDE05G1718 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 4.5e-07 58.2 71 42.3
PSO478G0292 Papaver somniferum HOM05D000528 ORTHO05D000999 5.9e-07 57.8 75 44.0
PSO782G2518 Papaver somniferum HOM05D000528 ORTHO05D000999 5.9e-07 57.8 75 44.0
Gohir.D08G042600 Gossypium hirsutum HOM05D000528 ORTHO05D000999 7.7e-07 57.4 75 44.0
Gorai.004G041200 Gossypium raimondii HOM05D000528 ORTHO05D000999 7.7e-07 57.4 75 44.0
Atru.chr5.321 Acer truncatum HOM05D000528 ORTHO05D000999 2.3e-06 55.8 75 41.3
Gohir.A08G133701 Gossypium hirsutum HOM05D000528 ORTHO05D000999 2.3e-06 55.8 75 44.0
Gohir.D08G154800 Gossypium hirsutum HOM05D000528 ORTHO05D000999 2.3e-06 55.8 75 44.0
Gorai.004G160900 Gossypium raimondii HOM05D000528 ORTHO05D000999 2.3e-06 55.8 75 44.0
QL08p052116 Quercus lobata HOM05D000528 ORTHO05D000999 2.3e-06 55.8 80 40.0
Gohir.A11G081300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 2.9e-06 55.5 75 41.3
Gohir.D11G085900 Gossypium hirsutum HOM05D000528 ORTHO05D000999 2.9e-06 55.5 75 41.3
Gorai.007G091700 Gossypium raimondii HOM05D000528 ORTHO05D000999 2.9e-06 55.5 75 41.3
CiPaw.01G261100 Carya illinoinensis HOM05D000528 ORTHO05D000999 3.8e-06 55.1 75 41.3
COL.COLO4_12559 Corchorus olitorius HOM05D000528 ORTHO05D000999 3.8e-06 55.1 75 41.3
Haze_16826 Corylus avellana HOM05D000528 ORTHO05D000999 3.8e-06 55.1 75 41.3
Eucgr.I01543 Eucalyptus grandis HOM05D000528 ORTHO05D000999 3.8e-06 55.1 39 64.1
Manes.01G265100 Manihot esculenta HOM05D000528 ORTHO05D000999 3.8e-06 55.1 75 41.3
Sabra02G0117900 Salix brachista HOM05D000528 ORTHO05D000999 3.8e-06 55.1 75 42.7
Thecc.01G375000 Theobroma cacao HOM05D000528 ORTHO05D000999 3.8e-06 55.1 75 41.3
CDE05G0957 Ceratophyllum demersum HOM05D000528 ORTHO05D000999 5.0e-06 54.7 71 42.3
Thhalv10006576m.g Eutrema salsugineum HOM05D000528 ORTHO05D000999 5.0e-06 54.7 72 40.3
TWI59G0018 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 5.0e-06 54.7 75 41.3
TAR636G0580 Trochodendron aralioides HOM05D000528 ORTHO05D000999 5.0e-06 54.7 75 42.7
Aa31LG10G15090 Aethionema arabicum HOM05D000528 ORTHO05D000999 6.6e-06 54.3 75 40.0
CANSAT56G0585 Cannabis sativa HOM05D000528 ORTHO05D000999 6.6e-06 54.3 75 41.3
Cc02_g36590 Coffea canephora HOM05D000528 ORTHO05D000999 6.6e-06 54.3 75 41.3
Potri.014G070600 Populus trichocarpa HOM05D000528 ORTHO05D000999 6.6e-06 54.3 75 41.3
Prupe.2G146800 Prunus persica HOM05D000528 ORTHO05D000999 6.6e-06 54.3 76 40.8
RcHm_v2.0_Chr1g0350731 Rosa chinensis HOM05D000528 ORTHO05D000999 6.6e-06 54.3 76 40.8
TPR.G26932 Trifolium pratense HOM05D000528 ORTHO05D000999 6.6e-06 54.3 75 41.3
DCAR_006872 Daucus carota HOM05D000528 ORTHO05D000999 8.6e-06 53.9 76 39.5
Lj9C571G3 Lonicera japonica HOM05D000528 ORTHO05D000999 8.6e-06 53.9 75 41.3
Nn4g26427 Nelumbo nucifera HOM05D000528 ORTHO05D000999 8.6e-06 53.9 75 41.3
SHI13520 Sapria himalayana HOM05D000528 ORTHO05D000999 8.6e-06 53.9 75 41.3


User provided reference genes

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