Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00012 Brassica carinata HOM05D000319 ORTHO05D094154 4.6e-74 281.2 145 100.0
Sp7g15740 Schrenkiella parvula HOM05D000319 ORTHO05D003924 6.7e-09 64.7 37 83.8
Aa31LG6G1000 Aethionema arabicum HOM05D000319 ORTHO05D003924 2.5e-08 62.8 37 83.8
AT5G46210 Arabidopsis thaliana HOM05D000319 ORTHO05D003924 5.7e-08 61.6 37 81.1
MSTRG.13254 Avicennia marina HOM05D000319 ORTHO05D003924 5.7e-08 61.6 37 81.1
MSTRG.14776 Avicennia marina HOM05D000319 ORTHO05D003924 5.7e-08 61.6 37 81.1
CAN.G39.2 Capsicum annuum HOM05D000319 ORTHO05D003924 5.7e-08 61.6 38 78.9
Thhalv10024458m.g Eutrema salsugineum HOM05D000319 ORTHO05D003924 5.7e-08 61.6 37 81.1
Oeu034142.3 Olea europaea HOM05D000319 ORTHO05D003924 5.7e-08 61.6 37 81.1
THA.LOC104806130 Tarenaya hassleriana HOM05D000319 ORTHO05D003924 5.7e-08 61.6 37 81.1
BcaB07g30848 Brassica carinata HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
BcaC03g16838 Brassica carinata HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
BcaC04g21717 Brassica carinata HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
A02p29760 Brassica napus HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
A06p46090 Brassica napus HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
A09p22170 Brassica napus HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
C02p47170 Brassica napus HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
C07p29430 Brassica napus HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
C09p28330 Brassica napus HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
BolC2t10761H Brassica oleracea HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
BolC7t43491H Brassica oleracea HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
BolC9t55708H Brassica oleracea HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
BraA02t07998Z Brassica rapa HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
BraA09t37822Z Brassica rapa HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
Thhalv10000782m.g Eutrema salsugineum HOM05D000319 ORTHO05D003924 9.7e-08 60.8 37 81.1
AL8G12250 Arabidopsis lyrata HOM05D000319 ORTHO05D003924 1.3e-07 60.5 37 78.4
Carub.0008s0171 Capsella rubella HOM05D000319 ORTHO05D003924 1.3e-07 60.5 37 78.4
Hma1.2p1_0020F.1_g014000 Hydrangea macrophylla HOM05D000319 ORTHO05D003924 1.7e-07 60.1 37 81.1
MD05G1283200 Malus domestica HOM05D000319 ORTHO05D003924 1.7e-07 60.1 37 78.4
SalBow7G1096 Salvia bowleyana HOM05D000319 ORTHO05D003924 1.7e-07 60.1 37 78.4
ECA236G0438 Erigeron canadensis HOM05D000319 ORTHO05D003924 2.2e-07 59.7 37 78.4
Nitab4.5_0000717g0060 Nicotiana tabacum HOM05D000319 ORTHO05D003924 2.2e-07 59.7 37 78.4
Nitab4.5_0028708g0010 Nicotiana tabacum HOM05D000319 ORTHO05D003924 2.2e-07 59.7 37 78.4
Os03g0786800 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D003924 2.2e-07 59.7 37 78.4
Peaxi162Scf00307g00095 Petunia axillaris HOM05D000319 ORTHO05D003924 2.2e-07 59.7 37 78.4
Solyc02g021470.4 Solanum lycopersicum HOM05D000319 ORTHO05D003924 2.2e-07 59.7 37 78.4
Sopen02g005950 Solanum pennellii HOM05D000319 ORTHO05D003924 2.2e-07 59.7 37 78.4
MBI02_g35823_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D003924 2.8e-07 59.3 37 78.4
Nitab4.5_0006498g0010 Nicotiana tabacum HOM05D000319 ORTHO05D003924 2.8e-07 59.3 37 78.4
CiPaw.10G091300 Carya illinoinensis HOM05D000319 ORTHO05D003924 3.7e-07 58.9 37 78.4
ClCG03G006820 Citrullus lanatus HOM05D000319 ORTHO05D003924 3.7e-07 58.9 37 78.4
MELO3C002738.2 Cucumis melo HOM05D000319 ORTHO05D003924 3.7e-07 58.9 37 78.4
CsaV3_1G032400 Cucumis sativus L. HOM05D000319 ORTHO05D003924 3.7e-07 58.9 37 78.4
Dinv30756 Davidia involucrata HOM05D000319 ORTHO05D003924 3.7e-07 58.9 37 75.7
Dinv32244 Davidia involucrata HOM05D000319 ORTHO05D003924 3.7e-07 58.9 37 75.7
PSO541G2488 Papaver somniferum HOM05D000319 ORTHO05D003924 3.7e-07 58.9 37 75.7
PSO675G5949 Papaver somniferum HOM05D000319 ORTHO05D003924 3.7e-07 58.9 37 75.7
Aa31LG9G6710 Aethionema arabicum HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 78.4
CSS0010305 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 78.4
CSS0033707 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 78.4
Gohir.A06G137800 Gossypium hirsutum HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 75.7
Gohir.D06G143000 Gossypium hirsutum HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 75.7
Gorai.010G166800 Gossypium raimondii HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 75.7
QL11p052014 Quercus lobata HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 78.4
QL11p052236 Quercus lobata HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 78.4
Rhsim13G0114000 Rhododendron simsii HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 75.7
Zm00001eb213380 Zea mays HOM05D000319 ORTHO05D003924 4.8e-07 58.5 37 75.7
CARHR175580 Cardamine hirsuta HOM05D000319 ORTHO05D003924 6.3e-07 58.2 37 78.4
Cpa.g.sc166.1 Carica papaya HOM05D000319 ORTHO05D003924 6.3e-07 58.2 37 75.7
CDE02G3451 Ceratophyllum demersum HOM05D000319 ORTHO05D003924 6.3e-07 58.2 37 75.7
CDE08G0075 Ceratophyllum demersum HOM05D000319 ORTHO05D003924 6.3e-07 58.2 37 75.7
HanXRQChr15g0480871 Helianthus annuus HOM05D000319 ORTHO05D003924 6.3e-07 58.2 37 75.7
Lsat_1_v5_gn_7_28440 Lactuca sativa HOM05D000319 ORTHO05D003924 6.3e-07 58.2 37 75.7
Oeu030933.1 Olea europaea HOM05D000319 ORTHO05D003924 6.3e-07 58.2 37 75.7
BraA06t27474Z Brassica rapa HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 78.4
CSS0009461 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
CSS0037482 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
CANSAT35G1549 Cannabis sativa HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
Ca_00538_v3 Cicer arietinum L. HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
FvH4_3g05480 Fragaria vesca HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
FAN11G4009 Fragaria x ananassa HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
FAN16G3086 Fragaria x ananassa HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
FAN21G3114 Fragaria x ananassa HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
Oeu031275.1 Olea europaea HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
Psat1g188720 Pisum sativum HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
HPP92_019548 Vanilla planifolia HOM05D000319 ORTHO05D003924 8.2e-07 57.8 37 75.7
AagrBONN_evm.TU.Sc2ySwM_344.1299 Anthoceros agrestis HOM05D000319 ORTHO05D003924 1.1e-06 57.4 37 70.3
EL10Ac8g19675 Beta vulgaris HOM05D000319 ORTHO05D003924 1.1e-06 57.4 37 75.7
Migut.H01359 Erythranthe guttata HOM05D000319 ORTHO05D003924 1.1e-06 57.4 37 73.0
Glyma.08G096100 Glycine max HOM05D000319 ORTHO05D003924 1.1e-06 57.4 37 75.7
MD10G1261500 Malus domestica HOM05D000319 ORTHO05D003924 1.1e-06 57.4 37 75.7
Sed0009613 Sechium edule HOM05D000319 ORTHO05D003924 1.1e-06 57.4 37 75.7
Sed0018157 Sechium edule HOM05D000319 ORTHO05D003924 1.1e-06 57.4 37 75.7
Solyc02g070460.3 Solanum lycopersicum HOM05D000319 ORTHO05D003924 1.1e-06 57.4 37 73.0
Zm00001eb059990 Zea mays HOM05D000319 ORTHO05D003924 1.1e-06 57.4 37 73.0
Actinidia07702 Actinidia chinensis HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
CAN.G702.31 Capsicum annuum HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 73.0
AUR62002747 Chenopodium quinoa HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
AUR62030195 Chenopodium quinoa HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
Ciclev10014310m.g Citrus clementina HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
Haze_05612 Corylus avellana HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
Duzib235G0530 Durio zibethinus HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 73.0
HanXRQChr04g0114291 Helianthus annuus HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
Manes.17G070701 Manihot esculenta HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
Nn3g20828 Nelumbo nucifera HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
Nn4g26557 Nelumbo nucifera HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 73.0
Hund17814 Selenicereus undatus HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
Sopen02g019550 Solanum pennellii HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 73.0
SGA_v2.0_scaffold51G18637 Striga asiatica HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 73.0
Thecc.06G149700 Theobroma cacao HOM05D000319 ORTHO05D003924 1.4e-06 57.0 37 75.7
Actinidia33698 Actinidia chinensis HOM05D000319 ORTHO05D003924 1.8e-06 56.6 50 64.0
Actinidia39579 Actinidia chinensis HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 73.0
CiPaw.09G122800 Carya illinoinensis HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 75.7
COL.COLO4_31063 Corchorus olitorius HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 73.0
Duzib160G0315 Durio zibethinus HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 73.0
Duzib192G0511 Durio zibethinus HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 73.0
FAN25G0737 Fragaria x ananassa HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 73.0
Gohir.A10G041500 Gossypium hirsutum HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 73.0
Gohir.D10G042300 Gossypium hirsutum HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 73.0
Gorai.011G044900 Gossypium raimondii HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 73.0
Prupe.4G081400 Prunus persica HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 75.7
Sc05g0006170 Simmondsia chinensis HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 75.7
TAR624G1128 Trochodendron aralioides HOM05D000319 ORTHO05D003924 1.8e-06 56.6 37 73.0
unitig_61.g26081 Utricularia gibba HOM05D000319 ORTHO05D003924 1.8e-06 56.6 38 76.3
DCAR_007888 Daucus carota HOM05D000319 ORTHO05D003924 2.4e-06 56.2 37 73.0
Glyma.05G140800 Glycine max HOM05D000319 ORTHO05D003924 2.4e-06 56.2 37 75.7
TPR.G26227 Trifolium pratense HOM05D000319 ORTHO05D003924 2.4e-06 56.2 37 73.0
TAR626G0281 Trochodendron aralioides HOM05D000319 ORTHO05D003924 2.4e-06 56.2 37 73.0
Actinidia16707 Actinidia chinensis HOM05D000319 ORTHO05D003924 3.1e-06 55.8 50 64.0
Glyma.13G218600 Glycine max HOM05D000319 ORTHO05D003924 3.1e-06 55.8 37 73.0
Glyma.15G093600 Glycine max HOM05D000319 ORTHO05D003924 3.1e-06 55.8 37 73.0
Lalb_Chr18g0055391 Lupinus albus HOM05D000319 ORTHO05D003924 3.1e-06 55.8 37 73.0
Medtr2g019260 Medicago truncatula HOM05D000319 ORTHO05D003924 3.1e-06 55.8 37 73.0
Sabra11G0066900 Salix brachista HOM05D000319 ORTHO05D003924 3.1e-06 55.8 37 73.0
TAR627G0327 Trochodendron aralioides HOM05D000319 ORTHO05D003924 3.1e-06 55.8 37 73.0
VMungo0540G0819 Vigna mungo HOM05D000319 ORTHO05D003924 3.1e-06 55.8 37 73.0
GSVIVG01021502001 Vitis vinifera HOM05D000319 ORTHO05D003924 3.1e-06 55.8 37 73.0
Atru.chr10.1215 Acer truncatum HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
ATR1098G147 Amborella trichopoda HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 70.3
Aqoxy1G01695 Aquilegia oxysepala HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 70.3
arahy.Tifrunner.gnm1.ann1.503TH3 Arachis hypogaea HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
arahy.Tifrunner.gnm1.ann1.XPBU9Q Arachis hypogaea HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
Gohir.A06G196800 Gossypium hirsutum HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
Gohir.D06G204300 Gossypium hirsutum HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
Gorai.010G238300 Gossypium raimondii HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
Lj1A1191G70 Lonicera japonica HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 75.7
Lj2A304T50 Lonicera japonica HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
Potri.011G084400 Populus trichocarpa HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
PGR042G1498 Punica granatum HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
RcHm_v2.0_Chr5g0014271 Rosa chinensis HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 73.0
Sp2g11070 Schrenkiella parvula HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 75.7
vmacro03331 Vaccinium macrocarpon HOM05D000319 ORTHO05D003924 4.1e-06 55.5 37 70.3
arahy.Tifrunner.gnm1.ann1.0GN70T Arachis hypogaea HOM05D000319 ORTHO05D003924 5.3e-06 55.1 37 73.0
arahy.Tifrunner.gnm1.ann1.K9BQ1G Arachis hypogaea HOM05D000319 ORTHO05D003924 5.3e-06 55.1 37 73.0
Potri.004G132900 Populus trichocarpa HOM05D000319 ORTHO05D003924 5.3e-06 55.1 37 73.0
Sabra04G0085100 Salix brachista HOM05D000319 ORTHO05D003924 5.3e-06 55.1 37 73.0
SMO134G0287 Selaginella moellendorffii HOM05D000319 ORTHO05D003924 5.3e-06 55.1 37 70.3
Lj6g0003521 Lotus japonicus HOM05D000319 ORTHO05D003924 6.9e-06 54.7 37 73.0
Rhsim02G0158900 Rhododendron simsii HOM05D000319 ORTHO05D003924 6.9e-06 54.7 37 73.0
ECA234G3264 Erigeron canadensis HOM05D000319 ORTHO05D003924 9.1e-06 54.3 37 70.3
Lsat_1_v5_gn_7_84401 Lactuca sativa HOM05D000319 ORTHO05D003924 9.1e-06 54.3 40 67.5
Mapoly0043s0127 Marchantia polymorpha HOM05D000319 ORTHO05D003924 9.1e-06 54.3 37 70.3


User provided reference genes

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