Gene: AT5G46210

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G46210
  • Transcript Identifier AT5G46210.1
  • Gene Type Coding gene
  • Location Chr5 : 18731569-18736653 : negative

Gene Family Information

  • ID HOM05D000319
  • #Genes/#Species 1449/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G46210.1
  • symbol CUL4
  • Alias ATCUL4
  • uniprot Q8LGH4

Descriptions

  • Description cullin4
  • Computational description cullin4 (CUL4); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 3B (TAIR:AT1G69670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010182
IMP
Gene Ontologysugar mediated signaling pathway1
GO:0006511
IEA
Gene Ontologyubiquitin-dependent protein catabolic process
GO:0006511
IEA
InterProubiquitin-dependent protein catabolic process
GO:0009738
IEA
GOA Databaseabscisic acid-activated signaling pathway
GO:0016567
IEA
GOA Databaseprotein ubiquitination
GO:0016567
IBA
Gene Ontologyprotein ubiquitination2
GO:0048575
IMP
Gene Ontologyshort-day photoperiodism, flowering3
GO:0006281
IMP
Gene OntologyDNA repair4
GO:0048825
IMP
Gene Ontologycotyledon development1
GO:0010154
IMP
Gene Ontologyfruit development1
GO:0009755
IMP
Gene Ontologyhormone-mediated signaling pathway1
GO:0048367
IMP
Gene Ontologyshoot system development5
GO:0010100
IMP
Gene Ontologynegative regulation of photomorphogenesis5
GO:0009908
IMP
Gene Ontologyflower development5
GO:0000209
IDA
Gene Ontologyprotein polyubiquitination5
GO:0048366
IMP
Gene Ontologyleaf development6
GO:0009640
IMP
Gene Ontologyphotomorphogenesis6

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031625
IEA
GOA Databaseubiquitin protein ligase binding
GO:0031625
IBA
Gene Ontologyubiquitin protein ligase binding2
GO:0031625
IEA
InterProubiquitin protein ligase binding
GO:0004842
IBA
IC
Gene Ontologyubiquitin-protein transferase activity2 5
GO:0005515
IPI
Gene Ontologyprotein binding7

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031461
IEA
GOA Databasecullin-RING ubiquitin ligase complex
GO:0031461
IBA
Gene Ontologycullin-RING ubiquitin ligase complex2
GO:0005829
IDA
GOA Databasecytosol
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
Gene Ontologynucleus5
GO:0000151
IPI
Gene Ontologyubiquitin ligase complex5
GO:0080008
IPI
Gene OntologyCul4-RING E3 ubiquitin ligase complex6
GO:0009507
ISM
Gene Ontologychloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019559 Cullin protein, neddylation domain
IPR016158 Cullin homology domain
IPR036317 Cullin homology domain superfamily
IPR001373 Cullin, N-terminal
IPR045093 Cullin
IPR036390 Winged helix DNA-binding domain superfamily
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR016159 Cullin repeat-like-containing domain superfamily
Mapman id Description
19.2.2.8.3.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL4-DDB1 E3 ubiquitin ligase complexes.scaffold component CUL4