Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 1.0e-269 932.9 512 100.0
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 1.0e-269 932.9 512 100.0
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 1.4e-263 912.5 543 91.3
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 6.4e-248 860.5 504 92.1
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 3.1e-242 841.6 533 87.1
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 3.8e-208 728.4 521 81.0
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.1e-178 630.6 578 67.3
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.8e-178 629.8 559 69.2
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 5.6e-175 618.2 543 70.3
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 5.6e-175 618.2 543 70.3
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 2.6e-172 609.4 550 68.9
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 7.8e-169 597.8 552 66.5
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.5e-167 593.6 543 68.1
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 7.3e-167 591.3 565 65.8
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 4.7e-166 588.6 557 66.6
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 3.4e-164 582.4 550 67.5
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 1.6e-161 573.5 565 66.5
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 5.2e-149 531.9 503 67.4
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 7.1e-130 468.4 467 64.5
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 5.3e-101 372.5 630 45.4
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.2e-94 350.5 621 45.7
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 3.0e-56 223.8 316 49.7
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 8.3e-54 215.7 419 41.1
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.8e-53 214.5 310 43.2
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.7e-52 210.7 591 36.9
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 3.0e-51 207.2 605 35.9
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 1.1e-50 205.3 187 71.1
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.5e-50 204.9 311 48.2
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 9.5e-50 202.2 605 35.5
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 9.5e-50 202.2 318 47.8
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.2e-49 201.8 321 44.5
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 2.1e-49 201.1 606 35.0
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 3.6e-49 200.3 427 38.4
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.1e-48 198.7 305 46.9
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 1.8e-48 198.0 648 33.3
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.8e-48 198.0 311 46.3
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 3.1e-48 197.2 321 44.5
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.5e-47 194.9 625 34.1
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 2.0e-47 194.5 322 46.3
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 2.0e-47 194.5 486 38.3
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 9.8e-47 192.2 305 43.9
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 1.3e-46 191.8 315 44.8
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 3.7e-46 190.3 315 46.3
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.4e-45 188.3 422 39.1
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 2.4e-45 187.6 322 43.8
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 3.5e-44 183.7 337 43.3
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 3.5e-44 183.7 406 39.4
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.3e-43 181.8 390 40.5
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 3.0e-43 180.6 533 36.8
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 8.6e-43 179.1 528 33.0
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 1.1e-42 178.7 396 39.4
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 7.3e-42 176.0 319 43.3
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 3.6e-41 173.7 507 33.5
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 3.6e-41 173.7 598 35.6
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 1.4e-40 171.8 588 34.5
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.8e-40 171.4 312 42.0
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 2.3e-40 171.0 279 40.1
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 8.9e-40 169.1 332 40.7
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 4.4e-39 166.8 359 37.3
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 1.3e-38 165.2 406 36.7
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.7e-38 164.9 307 43.6
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 2.9e-38 164.1 438 33.1
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 4.9e-38 163.3 337 40.7
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 8.3e-38 162.5 318 37.7
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 1.1e-37 162.2 275 38.9
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 1.4e-37 161.8 549 31.5
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.9e-37 161.4 547 33.8
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 7.1e-37 159.5 348 38.8
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 9.2e-37 159.1 492 32.3
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.2e-36 158.7 319 41.4
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 2.7e-36 157.5 289 43.3
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 7.8e-36 156.0 620 32.3
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 7.8e-36 156.0 369 33.9
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 7.8e-36 156.0 317 36.6
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 3.0e-35 154.1 586 33.4
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.5e-34 151.8 313 39.3
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 3.3e-34 150.6 286 36.0
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 9.5e-34 149.1 303 39.3
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 2.8e-33 147.5 292 40.1
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 3.6e-33 147.1 370 33.0
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 3.6e-33 147.1 540 33.7
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 3.6e-33 147.1 292 40.1
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.4e-32 144.4 547 33.1
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 8.9e-32 142.5 529 30.1
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 8.9e-32 142.5 300 42.3
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 7.6e-31 139.4 424 31.6
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 1.3e-30 138.7 286 42.3
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 3.2e-29 134.0 296 34.1
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 7.8e-28 129.4 565 30.1
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 7.8e-28 129.4 469 33.9
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.0e-27 129.0 405 33.6
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.3e-27 128.6 566 31.3
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 8.7e-27 125.9 210 42.9
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 1.5e-26 125.2 543 31.7
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.5e-26 125.2 530 32.3
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.5e-26 125.2 188 44.1
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 1.9e-26 124.8 552 29.2
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.6e-25 120.6 572 32.0
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 6.2e-25 119.8 360 32.8
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 2.0e-23 114.8 363 33.9
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 3.4e-23 114.0 573 30.2
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 7.6e-23 112.8 575 28.5
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 9.9e-23 112.5 440 31.4
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 2.9e-22 110.9 359 29.5
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 3.2e-21 107.5 325 32.9
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.2e-20 105.5 423 28.8
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 3.5e-20 104.0 206 36.9
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.0e-19 100.9 563 25.2
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 1.1e-18 99.0 562 28.6
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.9e-18 98.2 584 30.0
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 5.6e-18 96.7 300 31.0
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 5.6e-18 96.7 141 43.3
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 1.3e-17 95.5 160 51.2
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 1.3e-17 95.5 366 32.2
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 6.2e-17 93.2 246 32.5
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 5.8e-15 86.7 53 75.5
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.9e-14 84.3 451 27.9
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 2.9e-14 84.3 442 25.6
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 5.4e-13 80.1 754 23.5
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 4.6e-12 77.0 189 33.9
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 1.3e-11 75.5 191 34.6
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 2.3e-11 74.7 254 35.4
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 3.0e-11 74.3 294 31.6
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 8.7e-11 72.8 64 59.4
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 1.9e-10 71.6 47 70.2
A02p30240 Brassica napus HOM05D003055 ORTHO05D027220 5.6e-10 70.1 47 70.2
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 5.6e-10 70.1 47 68.1
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 5.6e-10 70.1 243 33.3
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 2.8e-09 67.8 161 36.0
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 3.7e-09 67.4 133 34.6
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 2.4e-08 64.7 101 39.6
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 3.1e-08 64.3 488 23.8
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 5.3e-08 63.5 234 34.6
BraA01t02912Z Brassica rapa HOM05D005642 ORTHO05D006672 9.0e-08 62.8 70 45.7
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 5.8e-07 60.1 434 27.4
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 7.6e-07 59.7 228 28.5
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 9.9e-07 59.3 542 26.2
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 2.2e-06 58.2 255 31.8
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 2.9e-06 57.8 255 28.2
Dinv03806 Davidia involucrata HOM05D003044 ORTHO05D001869 3.8e-06 57.4 225 27.6
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 4.9e-06 57.0 243 28.8
FvH4_7g05440 Fragaria vesca HOM05D003044 ORTHO05D001869 4.9e-06 57.0 224 28.6
FvH4_7g05480 Fragaria vesca HOM05D003044 ORTHO05D001869 6.4e-06 56.6 228 28.5
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 6.4e-06 56.6 480 23.5
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 8.4e-06 56.2 229 33.6


User provided reference genes

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