Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51438 Brassica carinata HOM05D001653 ORTHO05D015791 4.8e-51 204.1 99 100.0
BolC1t01285H Brassica oleracea HOM05D001653 ORTHO05D015791 1.0e-40 169.9 89 94.4
C01p13110 Brassica napus HOM05D001653 ORTHO05D015791 3.8e-40 167.9 87 95.4
A03p67250 Brassica napus HOM05D001653 ORTHO05D015791 2.6e-36 155.2 83 94.0
BcaB06g26514 Brassica carinata HOM05D001653 ORTHO05D001751 1.2e-25 119.8 70 82.9
BcaC06g35542 Brassica carinata HOM05D001653 ORTHO05D001751 1.2e-25 119.8 70 82.9
A07p08810 Brassica napus HOM05D001653 ORTHO05D001751 1.2e-25 119.8 70 82.9
C07p13670 Brassica napus HOM05D001653 ORTHO05D001751 1.2e-25 119.8 70 82.9
BolC7t41862H Brassica oleracea HOM05D001653 ORTHO05D001751 1.2e-25 119.8 70 82.9
BraA07t28672Z Brassica rapa HOM05D001653 ORTHO05D001751 1.2e-25 119.8 70 82.9
Aa31LG8G10610 Aethionema arabicum HOM05D001653 ORTHO05D001751 4.6e-25 117.9 70 80.0
Sp3g21260 Schrenkiella parvula HOM05D001653 ORTHO05D001751 5.9e-25 117.5 70 81.4
Thhalv10020003m.g Eutrema salsugineum HOM05D001653 ORTHO05D001751 1.3e-24 116.3 70 81.4
CARHR100020 Cardamine hirsuta HOM05D001653 ORTHO05D001751 8.6e-24 113.6 70 78.6
A01p31490 Brassica napus HOM05D001653 ORTHO05D001751 1.5e-23 112.8 70 78.6
BraA01t03275Z Brassica rapa HOM05D001653 ORTHO05D001751 1.5e-23 112.8 70 78.6
C01p40130 Brassica napus HOM05D001653 ORTHO05D001751 3.3e-23 111.7 70 77.1
BolC1t03969H Brassica oleracea HOM05D001653 ORTHO05D001751 3.3e-23 111.7 70 77.1
Carub.0003s2432 Capsella rubella HOM05D001653 ORTHO05D001751 4.3e-23 111.3 70 77.1
AT3G24180 Arabidopsis thaliana HOM05D001653 ORTHO05D001751 5.6e-23 110.9 70 77.1
Aa31LG8G10630 Aethionema arabicum HOM05D001653 ORTHO05D015791 9.5e-23 110.2 70 75.7
AL3G39080 Arabidopsis lyrata HOM05D001653 ORTHO05D001751 9.5e-23 110.2 70 77.1
BcaC05g24423 Brassica carinata HOM05D001653 ORTHO05D015791 9.5e-23 110.2 55 94.5
BraA10t42639Z Brassica rapa HOM05D000050 ORTHO05D015791 6.2e-22 107.5 68 77.9
THA.LOC104808721 Tarenaya hassleriana HOM05D001653 ORTHO05D001751 1.4e-21 106.3 68 73.5
A10p03650 Brassica napus HOM05D000050 ORTHO05D015791 3.1e-21 105.1 74 74.3
Aa31LG8G10640 Aethionema arabicum HOM05D001653 ORTHO05D001751 3.4e-20 101.7 62 79.0
Dinv29582 Davidia involucrata HOM05D001653 ORTHO05D001751 3.2e-18 95.1 59 74.6
Lalb_Chr21g0312621 Lupinus albus HOM05D001653 ORTHO05D001751 2.0e-17 92.4 63 65.1
TAR633G0328 Trochodendron aralioides HOM05D001653 ORTHO05D001751 2.0e-17 92.4 63 71.4
Cpa.g.sc59.121 Carica papaya HOM05D001653 ORTHO05D001751 3.5e-17 91.7 59 74.6
Cfa011813 Carpinus fangiana HOM05D001653 ORTHO05D001751 1.0e-16 90.1 59 71.2
Haze_11592 Corylus avellana HOM05D001653 ORTHO05D001751 1.0e-16 90.1 59 71.2
Lalb_Chr06g0169731 Lupinus albus HOM05D001653 ORTHO05D001751 1.0e-16 90.1 63 65.1
Dinv38253 Davidia involucrata HOM05D001653 ORTHO05D001751 1.3e-16 89.7 59 69.5
Manes.15G051715 Manihot esculenta HOM05D001653 ORTHO05D001751 1.3e-16 89.7 62 69.4
Nn1g07801 Nelumbo nucifera HOM05D001653 ORTHO05D001751 1.3e-16 89.7 61 70.5
Rhsim09G0054000 Rhododendron simsii HOM05D001653 ORTHO05D001751 3.0e-16 88.6 62 64.5
Rhsim09G0054600 Rhododendron simsii HOM05D001653 ORTHO05D001751 3.0e-16 88.6 62 64.5
VMungo0720G3080 Vigna mungo HOM05D001653 ORTHO05D001751 3.9e-16 88.2 59 67.8
GSVIVG01029084001 Vitis vinifera HOM05D001653 ORTHO05D015791 3.9e-16 88.2 62 64.5
Atru.chr4.1741 Acer truncatum HOM05D001653 ORTHO05D001751 5.0e-16 87.8 91 52.7
ClCG06G007680 Citrullus lanatus HOM05D001653 ORTHO05D001751 6.6e-16 87.4 63 66.7
HanXRQChr07g0185671 Helianthus annuus HOM05D001653 ORTHO05D001751 8.6e-16 87.0 67 59.7
TWI09G1409 Tripterygium wilfordii HOM05D001653 ORTHO05D001751 8.6e-16 87.0 58 72.4
HPP92_022497 Vanilla planifolia HOM05D001653 ORTHO05D001751 8.6e-16 87.0 62 61.3
HPP92_022504 Vanilla planifolia HOM05D001653 ORTHO05D001751 8.6e-16 87.0 62 61.3
MELO3C020463.2 Cucumis melo HOM05D001653 ORTHO05D001751 1.1e-15 86.7 67 62.7
CsaV3_2G011410 Cucumis sativus L. HOM05D001653 ORTHO05D001751 1.1e-15 86.7 67 62.7
Glyma.10G192400 Glycine max HOM05D001653 ORTHO05D001751 1.1e-15 86.7 59 66.1
Glyma.20G198000 Glycine max HOM05D001653 ORTHO05D001751 1.1e-15 86.7 59 66.1
Lj5g0004348 Lotus japonicus HOM05D001653 ORTHO05D001751 1.1e-15 86.7 59 67.8
PGR083G1395 Punica granatum HOM05D001653 ORTHO05D001751 1.1e-15 86.7 53 73.6
Sc25g0005850 Simmondsia chinensis HOM05D001653 ORTHO05D001751 1.1e-15 86.7 53 71.7
Actinidia33392 Actinidia chinensis HOM05D001653 ORTHO05D015791 1.5e-15 86.3 59 71.2
CDE02G0890 Ceratophyllum demersum HOM05D001653 ORTHO05D001751 1.5e-15 86.3 92 52.2
FvH4_4g00440 Fragaria vesca HOM05D001653 ORTHO05D001751 1.5e-15 86.3 59 66.1
FAN12G2988 Fragaria x ananassa HOM05D001653 ORTHO05D001751 1.5e-15 86.3 59 66.1
FAN22G1060 Fragaria x ananassa HOM05D001653 ORTHO05D001751 1.5e-15 86.3 59 66.1
C05p03360 Brassica napus HOM05D000050 ORTHO05D000654 1.9e-15 85.9 41 100.0
Nitab4.5_0003750g0030 Nicotiana tabacum HOM05D001653 ORTHO05D001751 1.9e-15 85.9 51 74.5
Nitab4.5_0004974g0080 Nicotiana tabacum HOM05D001653 ORTHO05D001751 1.9e-15 85.9 51 74.5
CiPaw.01G123600 Carya illinoinensis HOM05D001653 ORTHO05D001751 2.5e-15 85.5 53 75.5
Lj6A562G37 Lonicera japonica HOM05D001653 ORTHO05D001751 2.5e-15 85.5 59 66.1
Os10g0473400 Oryza sativa ssp. japonica HOM05D001653 ORTHO05D001751 2.5e-15 85.5 51 74.5
QL06p023857 Quercus lobata HOM05D001653 ORTHO05D001751 2.5e-15 85.5 59 69.5
Ca_09778_v3 Cicer arietinum L. HOM05D001653 ORTHO05D001751 3.3e-15 85.1 59 66.1
DCAR_026598 Daucus carota HOM05D001653 ORTHO05D001751 3.3e-15 85.1 58 65.5
Gohir.A09G203900 Gossypium hirsutum HOM05D001653 ORTHO05D001751 3.3e-15 85.1 51 74.5
Gorai.006G221200 Gossypium raimondii HOM05D001653 ORTHO05D001751 3.3e-15 85.1 51 74.5
Phvul.007G134300 Phaseolus vulgaris HOM05D001653 ORTHO05D001751 3.3e-15 85.1 61 63.9
Potri.003G178000 Populus trichocarpa HOM05D001653 ORTHO05D001751 3.3e-15 85.1 54 74.1
TAR362G1095 Trochodendron aralioides HOM05D001653 ORTHO05D001751 3.3e-15 85.1 50 78.0
vmacro00486 Vaccinium macrocarpon HOM05D001653 ORTHO05D001751 3.3e-15 85.1 62 62.9
MBI10_g33979_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 4.3e-15 84.7 53 69.8
Manes.03G149301 Manihot esculenta HOM05D001653 ORTHO05D001751 4.3e-15 84.7 62 64.5
Actinidia35875 Actinidia chinensis HOM05D001653 ORTHO05D001751 5.6e-15 84.3 63 66.7
Prupe.1G004700 Prunus persica HOM05D001653 ORTHO05D001751 5.6e-15 84.3 63 63.5
MD04G1004800 Malus domestica HOM05D001653 ORTHO05D001751 7.3e-15 84.0 59 64.4
Peaxi162Scf00047g00732 Petunia axillaris HOM05D001653 ORTHO05D001751 7.3e-15 84.0 51 72.5
Sed0018326 Sechium edule HOM05D001653 ORTHO05D001751 7.3e-15 84.0 63 63.5
Duzib151G0060 Durio zibethinus HOM05D001653 ORTHO05D001751 9.5e-15 83.6 51 74.5
SEGI_29816 Sequoiadendron giganteum HOM05D001653 ORTHO05D001751 9.5e-15 83.6 51 76.5
Thecc.04G206800 Theobroma cacao HOM05D001653 ORTHO05D001751 9.5e-15 83.6 51 72.5
PSO017G1217 Papaver somniferum HOM05D001653 ORTHO05D001751 1.2e-14 83.2 59 71.2
PSO063G1073 Papaver somniferum HOM05D001653 ORTHO05D001751 1.2e-14 83.2 59 71.2
CAN.G500.17 Capsicum annuum HOM05D001653 ORTHO05D001751 1.6e-14 82.8 51 68.6
Eucgr.H02851 Eucalyptus grandis HOM05D001653 ORTHO05D001751 1.6e-14 82.8 73 57.5
Ciclev10004255m.g Citrus clementina HOM05D001653 ORTHO05D001751 2.1e-14 82.4 58 62.1
Duzib212G0715 Durio zibethinus HOM05D001653 ORTHO05D001751 3.6e-14 81.6 51 70.6
ECA233G1914 Erigeron canadensis HOM05D001653 ORTHO05D001751 3.6e-14 81.6 51 70.6
Solyc09g091850.4 Solanum lycopersicum HOM05D001653 ORTHO05D001751 3.6e-14 81.6 51 68.6
Sopen09g034740 Solanum pennellii HOM05D001653 ORTHO05D001751 3.6e-14 81.6 51 68.6
Actinidia25625 Actinidia chinensis HOM05D001653 ORTHO05D001751 6.2e-14 80.9 62 64.5
Gohir.A10G122500 Gossypium hirsutum HOM05D001653 ORTHO05D001751 8.1e-14 80.5 51 74.5
RcHm_v2.0_Chr4g0385861 Rosa chinensis HOM05D001653 ORTHO05D001751 8.1e-14 80.5 59 64.4
Sabra03G0130600 Salix brachista HOM05D001653 ORTHO05D001751 8.1e-14 80.5 54 70.4
PGSC0003DMG400029664 Solanum tuberosum HOM05D001653 ORTHO05D001751 8.1e-14 80.5 51 66.7
EL10Ac2g02501 Beta vulgaris HOM05D001653 ORTHO05D001751 1.1e-13 80.1 52 67.3
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.1e-13 80.1 53 66.0
CSS0014444 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 1.4e-13 79.7 59 62.7
CSS0017520 Camellia sinensis var. sinensis HOM05D001653 ORTHO05D001751 1.4e-13 79.7 59 62.7
Medtr1g072720 Medicago truncatula HOM05D001653 ORTHO05D001751 1.4e-13 79.7 53 66.0
Zm00001eb046040 Zea mays HOM05D001653 ORTHO05D001751 3.1e-13 78.6 51 66.7
Zm00001eb096750 Zea mays HOM05D001653 ORTHO05D001751 3.1e-13 78.6 60 61.7
ATR0736G214 Amborella trichopoda HOM05D001653 ORTHO05D001751 4.0e-13 78.2 53 66.0
Gohir.D10G143500 Gossypium hirsutum HOM05D001653 ORTHO05D001751 4.0e-13 78.2 51 70.6
Gorai.011G160300 Gossypium raimondii HOM05D001653 ORTHO05D001751 4.0e-13 78.2 51 70.6
TPR.G1596 Trifolium pratense HOM05D001653 ORTHO05D001751 4.0e-13 78.2 53 66.0
AUR62042620 Chenopodium quinoa HOM05D001653 ORTHO05D001751 6.8e-13 77.4 53 62.3
Psat6g141360 Pisum sativum HOM05D001653 ORTHO05D001751 8.9e-13 77.0 53 66.0
Hund22355 Selenicereus undatus HOM05D001653 ORTHO05D001751 1.2e-12 76.6 58 58.6
MBI07_g37089_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 2.0e-12 75.9 80 48.8
DCAR_024488 Daucus carota HOM05D001653 ORTHO05D001751 2.6e-12 75.5 51 68.6
Lsat_1_v5_gn_6_59560 Lactuca sativa HOM05D001653 ORTHO05D001751 3.4e-12 75.1 46 71.7
Lsat_1_v5_gn_2_45581 Lactuca sativa HOM05D001653 ORTHO05D001751 5.8e-12 74.3 67 53.7
Ah.03g135480 Amaranthus hybridus HOM05D001653 ORTHO05D001751 9.9e-12 73.6 59 61.0
Migut.N00368 Erythranthe guttata HOM05D001653 ORTHO05D001751 9.9e-12 73.6 46 71.7
ECA238G1066 Erigeron canadensis HOM05D001653 ORTHO05D001751 1.7e-11 72.8 69 53.6
Eucgr.H00075 Eucalyptus grandis HOM05D001653 ORTHO05D001751 3.7e-11 71.6 49 65.3
SGA_v2.0_scaffold356G49800 Striga asiatica HOM05D001653 ORTHO05D001751 4.9e-11 71.2 73 52.1
Oeu001466.1 Olea europaea HOM05D001653 ORTHO05D001751 6.4e-11 70.9 60 58.3
CiPaw.02G067400 Carya illinoinensis HOM05D001653 ORTHO05D001751 1.1e-10 70.1 53 66.0
SalBow3G3025 Salvia bowleyana HOM05D001653 ORTHO05D001751 9.2e-10 67.0 49 61.2
MSTRG.21956 Avicennia marina HOM05D001653 ORTHO05D001751 6.0e-09 64.3 61 49.2
DCAR_030790 Daucus carota HOM05D001653 ORTHO05D001751 1.0e-08 63.5 51 54.9
Cc03_g07580 Coffea canephora HOM05D001653 ORTHO05D001751 1.7e-08 62.8 74 43.2
Pp3c8_21730 Physcomitrium patens HOM05D001653 ORTHO05D001751 3.3e-07 58.5 46 56.5
Pp3c20_20340 Physcomitrium patens HOM05D001653 ORTHO05D001751 9.5e-07 57.0 47 53.2
AagrBONN_evm.TU.Sc2ySwM_368.238 Anthoceros agrestis HOM05D001653 ORTHO05D001751 1.6e-06 56.2 46 56.5
Thecc.02G014100 Theobroma cacao HOM05D001653 ORTHO05D001751 1.6e-06 56.2 58 50.0
MBI03_g28418_MAGBIO Magnolia biondii HOM05D001653 ORTHO05D001751 2.8e-06 55.5 40 62.5
SEGI_16978 Sequoiadendron giganteum HOM05D001653 ORTHO05D015791 2.8e-06 55.5 47 55.3
Manes.10G115000 Manihot esculenta HOM05D001653 ORTHO05D001751 3.6e-06 55.1 43 62.8


User provided reference genes

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