Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 3.0e-25 117.9 66 100.0
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 1.1e-22 109.4 66 93.9
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 1.8e-22 108.6 66 93.9
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 1.8e-22 108.6 65 93.8
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 1.8e-22 108.6 65 93.8
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 5.4e-22 107.1 65 92.3
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 5.4e-22 107.1 65 92.3
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 5.4e-22 107.1 65 92.3
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 5.4e-22 107.1 65 92.3
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 5.4e-22 107.1 65 92.3
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 7.0e-22 106.7 65 92.3
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 1.2e-21 105.9 65 90.8
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 1.6e-21 105.5 65 90.8
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 1.6e-21 105.5 65 90.8
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 2.0e-21 105.1 66 90.9
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 3.5e-21 104.4 65 87.7
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 5.9e-21 103.6 67 91.0
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 7.7e-21 103.2 65 89.2
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 7.7e-21 103.2 63 90.5
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 1.0e-20 102.8 65 86.2
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 3.8e-20 100.9 63 85.7
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 3.8e-20 100.9 65 84.6
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 6.6e-20 100.1 65 86.2
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 1.5e-19 99.0 66 89.4
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 1.9e-19 98.6 65 81.5
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 3.0e-17 91.3 65 75.4
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 1.7e-15 85.5 62 72.6
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 1.4e-14 82.4 47 97.9
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 1.4e-14 82.4 63 74.6
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 3.1e-14 81.3 60 71.7
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 4.1e-14 80.9 59 74.6
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 4.1e-14 80.9 59 74.6
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 5.4e-14 80.5 61 72.1
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 7.0e-14 80.1 47 95.7
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 9.2e-14 79.7 61 72.1
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 9.2e-14 79.7 61 72.1
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 9.2e-14 79.7 61 72.1
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 1.2e-13 79.3 61 70.5
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 1.2e-13 79.3 59 74.6
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.2e-13 79.3 59 74.6
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.2e-13 79.3 59 74.6
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.2e-13 79.3 59 74.6
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 1.2e-13 79.3 59 74.6
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 1.2e-13 79.3 59 72.9
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 1.6e-13 79.0 60 71.7
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 1.6e-13 79.0 60 68.3
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 2.7e-13 78.2 62 71.0
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 3.5e-13 77.8 50 86.0
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 3.5e-13 77.8 58 72.4
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 4.5e-13 77.4 60 71.7
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 5.9e-13 77.0 60 70.0
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 7.8e-13 76.6 58 72.4
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 7.8e-13 76.6 60 71.7
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 7.8e-13 76.6 59 72.9
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.0e-12 76.3 61 65.6
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 1.0e-12 76.3 47 89.4
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 1.0e-12 76.3 59 72.9
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 1.0e-12 76.3 57 70.2
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 1.3e-12 75.9 59 67.8
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 1.3e-12 75.9 59 72.9
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 1.3e-12 75.9 59 72.9
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 1.7e-12 75.5 61 63.9
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 1.7e-12 75.5 59 69.5
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 1.7e-12 75.5 60 68.3
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 1.7e-12 75.5 61 65.6
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 2.3e-12 75.1 59 69.5
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 2.3e-12 75.1 61 67.2
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 2.3e-12 75.1 59 67.8
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 2.3e-12 75.1 59 69.5
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 2.3e-12 75.1 59 69.5
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 3.9e-12 74.3 64 67.2
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 5.0e-12 73.9 60 66.7
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 5.0e-12 73.9 59 67.8
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 6.6e-12 73.6 60 71.7
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 6.6e-12 73.6 60 71.7
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 6.6e-12 73.6 59 66.1
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 6.6e-12 73.6 61 68.9
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 6.6e-12 73.6 61 68.9
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 1.1e-11 72.8 61 62.3
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 1.1e-11 72.8 60 65.0
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 1.1e-11 72.8 61 65.6
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 1.5e-11 72.4 59 66.1
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 1.5e-11 72.4 54 72.2
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 1.5e-11 72.4 62 66.1
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 1.9e-11 72.0 62 66.1
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 1.9e-11 72.0 62 69.4
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 1.9e-11 72.0 60 68.3
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 3.3e-11 71.2 57 73.7
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 4.3e-11 70.9 60 68.3
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 4.3e-11 70.9 57 70.2
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 5.6e-11 70.5 57 70.2
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 7.3e-11 70.1 62 64.5
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 9.5e-11 69.7 61 57.4
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 9.5e-11 69.7 59 69.5
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 1.2e-10 69.3 55 69.1
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 2.1e-10 68.6 59 66.1
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 2.1e-10 68.6 61 60.7
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 2.1e-10 68.6 61 60.7
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 2.1e-10 68.6 61 60.7
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 2.1e-10 68.6 62 66.1
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 2.8e-10 68.2 61 62.3
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 6.1e-10 67.0 60 65.0
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 8.0e-10 66.6 60 65.0
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 8.0e-10 66.6 50 72.0
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 1.4e-09 65.9 61 62.3
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 2.3e-09 65.1 57 66.7
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 2.3e-09 65.1 49 73.5
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 6.8e-09 63.5 50 72.0
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 8.9e-09 63.2 62 59.7
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 7.5e-08 60.1 61 57.4
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 9.8e-08 59.7 49 69.4
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 1.7e-07 58.9 53 66.0
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 2.2e-07 58.5 47 68.1
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 8.3e-07 56.6 45 66.7
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 1.1e-06 56.2 50 66.0
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 1.4e-06 55.8 47 66.0
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 1.9e-06 55.5 61 52.5
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 2.4e-06 55.1 44 68.2
BcaC02g09329 Brassica carinata HOM05D005631 ORTHO05D006765 5.4e-06 53.9 64 57.8
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 7.0e-06 53.5 61 47.5


User provided reference genes

Program Settings