Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 4.4e-130 468.0 241 100.0
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 4.4e-130 468.0 241 100.0
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 2.2e-129 465.7 241 99.6
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 4.5e-119 431.4 244 92.6
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 1.7e-118 429.5 242 93.4
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 2.3e-110 402.5 244 88.5
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 8.9e-91 337.4 246 74.4
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 2.1e-87 326.2 249 72.3
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 4.7e-84 315.1 255 69.8
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 6.2e-84 314.7 248 69.0
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 5.8e-82 308.1 250 68.8
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 1.5e-77 293.5 254 65.0
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.2e-76 290.4 257 63.8
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.6e-76 290.0 257 63.0
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.1e-75 287.3 247 64.4
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 1.1e-75 287.3 256 63.7
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 8.9e-75 284.3 254 62.2
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 2.6e-74 282.7 250 64.8
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 2.6e-74 282.7 250 64.8
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 1.3e-73 280.4 256 61.7
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 1.3e-73 280.4 256 62.5
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.7e-73 280.0 257 62.3
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 6.2e-68 261.5 257 59.1
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 9.6e-61 237.7 249 53.0
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 4.0e-59 232.3 247 54.7
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 4.0e-59 232.3 245 53.5
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.0e-58 229.9 248 54.4
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.4e-58 229.2 250 53.2
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 7.6e-58 228.0 250 52.8
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 9.9e-58 227.6 252 53.2
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 1.3e-57 227.3 243 53.9
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 1.7e-57 226.9 250 52.8
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 1.7e-57 226.9 248 51.2
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.8e-57 225.7 250 52.0
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 4.9e-57 225.3 250 52.8
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.1e-56 224.2 250 52.4
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 4.2e-56 222.2 251 51.4
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 5.5e-56 221.9 247 50.6
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 7.1e-56 221.5 247 50.6
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 7.1e-56 221.5 247 51.0
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 9.3e-56 221.1 251 51.4
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.2e-55 220.7 248 49.2
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 2.1e-55 219.9 250 52.0
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.0e-54 217.6 256 52.3
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 1.3e-54 217.2 251 49.0
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 1.3e-54 217.2 235 51.1
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 2.3e-54 216.5 255 51.0
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 3.0e-54 216.1 250 50.8
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 3.0e-54 216.1 244 50.8
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 3.0e-54 216.1 254 50.0
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 3.9e-54 215.7 239 51.5
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 8.7e-54 214.5 243 49.8
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 8.7e-54 214.5 245 50.2
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 8.7e-54 214.5 257 49.4
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 1.1e-53 214.2 251 48.2
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.1e-53 214.2 236 52.5
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 1.9e-53 213.4 244 50.0
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 2.5e-53 213.0 242 52.1
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 2.5e-53 213.0 251 47.8
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 2.5e-53 213.0 243 48.6
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 3.3e-53 212.6 255 51.8
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 5.6e-53 211.8 254 50.0
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 5.6e-53 211.8 249 49.8
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 7.4e-53 211.5 246 50.8
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 9.6e-53 211.1 248 49.2
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.6e-52 210.3 251 47.4
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 2.1e-52 209.9 252 49.6
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 8.1e-52 208.0 255 49.4
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 1.1e-51 207.6 236 50.0
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.1e-51 207.6 240 50.4
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.4e-51 207.2 246 49.6
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 9.0e-51 204.5 252 47.6
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.2e-50 204.1 240 50.4
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.5e-50 203.8 246 48.4
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 2.6e-50 203.0 251 49.0
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 3.4e-50 202.6 236 50.0
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 3.4e-50 202.6 239 49.0
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 3.4e-50 202.6 240 48.8
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.0e-49 201.1 251 49.0
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 1.0e-49 201.1 249 49.4
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 1.7e-49 200.3 254 48.8
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 1.7e-49 200.3 223 51.1
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 2.9e-49 199.5 235 49.8
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 4.9e-49 198.7 248 47.2
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 4.9e-49 198.7 250 47.6
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 6.5e-49 198.4 248 48.8
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 1.1e-48 197.6 238 48.7
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 1.1e-48 197.6 248 48.4
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 4.2e-48 195.7 241 47.3
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 9.3e-48 194.5 235 47.7
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 1.2e-47 194.1 243 47.7
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.2e-47 194.1 235 47.7
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.6e-47 193.7 241 47.3
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 2.7e-47 193.0 256 47.3
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 2.7e-47 193.0 248 47.2
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 2.7e-47 193.0 248 47.2
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 3.5e-47 192.6 233 49.4
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.8e-46 190.3 245 45.7
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 3.9e-46 189.1 223 50.7
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 5.1e-46 188.7 253 45.8
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 1.5e-45 187.2 236 45.3
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 5.7e-45 185.3 244 47.5
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 9.6e-45 184.5 233 50.2
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 8.2e-44 181.4 226 47.3
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 1.4e-43 180.6 238 46.6
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.4e-43 179.9 181 54.7
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 1.5e-42 177.2 248 45.2
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.3e-41 174.1 124 74.2
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 1.3e-41 174.1 237 43.9
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 8.5e-41 171.4 238 45.0
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 2.5e-40 169.9 251 42.6
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 9.0e-35 151.4 188 47.3
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.7e-33 147.1 199 43.7
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.9e-32 143.7 182 44.5
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 8.2e-28 128.3 123 56.9
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 5.0e-17 92.4 123 48.0
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 3.2e-16 89.7 220 32.7
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.2e-15 87.8 130 40.0
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 2.7e-15 86.7 133 41.4
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 3.6e-15 86.3 231 33.3
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 6.1e-15 85.5 174 35.1
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 5.2e-14 82.4 140 41.4
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 9.1e-11 71.6 98 41.8
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 9.1e-11 71.6 80 52.5
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.3e-09 67.8 77 50.6
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.7e-09 67.4 107 40.2
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 7.2e-08 62.0 85 40.0
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 1.6e-07 60.8 52 51.9


User provided reference genes

Program Settings