Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 4.0e-281 970.7 468 100.0
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 8.4e-279 963.0 470 99.4
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 8.4e-279 963.0 470 99.4
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 1.4e-273 945.7 470 97.7
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 5.5e-270 933.7 470 96.2
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 3.4e-264 914.4 469 94.7
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 4.8e-258 894.0 471 91.9
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 7.9e-245 850.1 478 86.6
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 4.4e-243 844.3 473 86.5
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 3.4e-240 834.7 477 85.3
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 3.4e-240 834.7 476 85.1
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 7.5e-227 790.4 471 81.5
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 1.6e-213 746.1 394 88.8
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 6.6e-207 724.2 476 75.4
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 1.2e-192 676.8 454 70.5
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 2.7e-192 675.6 466 69.1
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.0e-191 673.7 466 70.4
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.3e-191 673.3 467 67.9
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 3.0e-191 672.2 464 69.8
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 7.3e-190 667.5 473 68.7
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 2.1e-189 666.0 469 69.3
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 2.8e-189 665.6 466 69.5
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 4.7e-189 664.8 469 69.1
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 4.7e-189 664.8 458 69.9
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 1.1e-188 663.7 476 68.5
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 4.0e-188 661.8 464 69.2
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 4.0e-188 661.8 469 68.7
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 4.0e-188 661.8 462 69.7
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 3.7e-186 655.2 455 69.5
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 6.4e-186 654.4 470 68.1
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 2.4e-185 652.5 478 67.4
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 5.4e-185 651.4 463 68.5
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 5.4e-185 651.4 399 75.2
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 5.4e-185 651.4 454 69.2
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 3.5e-184 648.7 453 68.2
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 1.3e-183 646.7 469 66.3
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.3e-183 646.7 465 67.7
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 1.3e-183 646.7 470 67.0
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 3.9e-183 645.2 473 65.8
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 5.1e-183 644.8 470 67.2
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 4.3e-182 641.7 426 69.5
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 5.6e-182 641.3 474 66.5
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 5.6e-182 641.3 473 65.5
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 5.6e-182 641.3 472 66.7
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 9.5e-182 640.6 466 67.2
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 1.2e-181 640.2 474 65.6
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 8.1e-181 637.5 464 65.7
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 1.8e-180 636.3 469 67.4
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 1.8e-180 636.3 474 66.7
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 5.2e-180 634.8 468 68.2
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 1.5e-179 633.3 472 65.7
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 2.0e-179 632.9 460 67.2
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 2.0e-179 632.9 462 67.3
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 4.4e-179 631.7 416 70.7
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 5.8e-179 631.3 491 63.5
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 7.6e-179 630.9 472 65.7
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 3.8e-178 628.6 454 67.6
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 4.9e-178 628.2 472 65.0
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 8.4e-178 627.5 472 65.5
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 8.4e-178 627.5 458 65.7
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 1.4e-177 626.7 469 65.5
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 7.1e-177 624.4 474 65.0
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 7.1e-177 624.4 472 64.6
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 2.1e-176 622.9 460 64.6
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 2.7e-176 622.5 419 69.2
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 3.5e-176 622.1 452 67.0
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.0e-175 620.5 478 63.2
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 1.0e-175 620.5 403 71.7
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 1.3e-175 620.2 493 63.5
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 3.0e-175 619.0 470 64.3
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 5.6e-174 614.8 399 71.4
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 7.3e-174 614.4 468 65.2
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 4.8e-173 611.7 471 62.6
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 1.1e-172 610.5 469 65.2
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.0e-171 606.3 462 62.3
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 3.4e-171 605.5 458 64.2
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 5.8e-171 604.7 461 63.1
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 5.8e-171 604.7 485 61.0
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 7.6e-171 604.4 484 61.8
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 7.6e-171 604.4 410 68.8
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 9.9e-171 604.0 463 62.9
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 1.3e-170 603.6 469 61.6
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 1.7e-170 603.2 421 67.7
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 1.2e-168 597.0 407 67.8
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 1.6e-168 596.7 398 69.1
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 3.0e-167 592.4 478 59.8
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.8e-164 583.2 403 66.0
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 2.9e-162 575.9 474 60.8
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.9e-161 573.2 384 66.7
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 3.2e-161 572.4 412 68.0
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 1.6e-160 570.1 357 72.0
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 2.7e-160 569.3 418 63.9
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 7.9e-160 567.8 412 62.6
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 1.8e-159 566.6 410 64.1
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.5e-158 562.8 384 68.2
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 6.9e-156 554.7 358 73.5
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 1.2e-155 553.9 361 71.5
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 2.0e-155 553.1 404 63.4
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 3.0e-151 539.3 416 64.2
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 3.7e-149 532.3 467 60.4
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 2.6e-147 526.2 356 68.0
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 3.2e-145 519.2 332 72.6
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 8.7e-143 511.1 381 64.3
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 1.1e-140 504.2 428 58.2
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 2.0e-139 500.0 380 63.4
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 2.3e-127 459.9 399 53.4
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 2.8e-125 453.0 408 50.7
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 1.8e-124 450.3 407 53.8
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.0e-122 444.5 404 51.7
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 2.0e-118 430.3 424 53.1
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 2.6e-115 419.9 251 78.5
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 3.5e-115 419.5 312 67.6
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 7.5e-110 401.7 436 45.6
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 1.2e-94 351.3 225 72.9
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 4.4e-86 322.8 245 56.3
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.2e-70 271.6 198 68.2
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.5e-70 271.2 192 63.0
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 2.1e-67 260.8 164 72.6
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 3.3e-65 253.4 214 56.5
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.1e-60 238.4 157 70.1
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 7.1e-60 235.7 236 57.2
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 5.3e-47 193.0 133 65.4
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 3.5e-43 180.3 139 56.1
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 6.3e-32 142.9 86 83.7
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.0e-29 135.6 476 25.4
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 1.8e-26 124.8 384 27.3
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 7.2e-20 102.8 387 27.6
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 6.1e-19 99.8 476 23.5
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 5.7e-17 93.2 55 85.5
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 1.4e-15 88.6 56 83.9
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 1.2e-11 75.5 61 62.3
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 1.2e-11 75.5 61 62.3
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 1.0e-10 72.4 103 37.9
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.3e-10 71.2 166 31.3
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 4.1e-07 60.5 55 49.1
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 5.3e-07 60.1 102 36.3
EL10Ac5g11353 Beta vulgaris HOM05D005705 ORTHO05D007152 7.7e-06 56.2 192 25.5


User provided reference genes

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