Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 6.6e-155 550.8 310 100.0
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 1.8e-152 542.7 310 94.2
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 5.2e-152 541.2 310 93.9
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 1.8e-144 516.2 310 94.8
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 4.6e-140 501.5 337 87.2
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 2.0e-127 459.5 312 85.9
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 2.4e-125 452.6 310 80.0
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 9.9e-119 430.6 310 77.7
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 1.5e-111 406.8 312 74.0
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 4.5e-111 405.2 310 74.5
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 2.9e-110 402.5 310 73.5
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 2.2e-102 376.3 312 70.8
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 7.4e-82 308.1 320 60.3
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 8.5e-78 294.7 229 69.4
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 7.7e-63 245.0 312 48.1
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 1.7e-62 243.8 307 51.1
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 2.5e-61 240.0 227 58.1
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 2.1e-60 236.9 244 54.9
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.4e-59 234.2 306 48.4
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 2.3e-59 233.4 306 48.0
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 1.2e-58 231.1 314 47.8
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.5e-58 230.7 311 48.2
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 1.3e-57 227.6 280 49.6
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 1.3e-57 227.6 305 46.9
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 2.8e-57 226.5 304 46.7
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 4.9e-57 225.7 309 46.6
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 6.3e-57 225.3 309 47.2
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 8.3e-57 224.9 314 47.1
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 1.8e-56 223.8 310 46.8
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 1.8e-56 223.8 309 47.9
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 5.4e-56 222.2 309 46.3
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 1.2e-55 221.1 302 45.7
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.6e-55 220.7 306 46.7
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 2.7e-55 219.9 310 46.1
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 2.3e-54 216.9 310 46.5
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 5.0e-54 215.7 232 49.6
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 5.0e-54 215.7 328 45.4
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 6.6e-54 215.3 319 46.1
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 1.5e-53 214.2 309 43.7
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 7.3e-53 211.8 236 51.3
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 9.5e-53 211.5 311 45.7
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 1.2e-52 211.1 363 40.5
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 1.0e-51 208.0 307 43.3
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 1.4e-51 207.6 223 53.8
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 3.0e-51 206.5 310 43.9
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 4.0e-51 206.1 236 51.3
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 5.2e-51 205.7 200 58.0
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 5.2e-51 205.7 221 51.1
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 8.9e-51 204.9 307 44.3
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 2.0e-50 203.8 238 51.7
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 2.0e-50 203.8 211 53.6
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 5.8e-50 202.2 223 51.6
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 7.5e-50 201.8 229 52.0
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 9.8e-50 201.4 314 44.9
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 2.2e-49 200.3 219 50.2
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 2.9e-49 199.9 199 56.3
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 3.7e-49 199.5 213 51.2
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 3.7e-49 199.5 258 48.8
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 4.9e-49 199.1 236 50.4
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 8.3e-49 198.4 222 49.1
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 8.3e-49 198.4 238 49.2
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 1.1e-48 198.0 282 45.0
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 4.1e-48 196.1 312 44.9
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 5.4e-48 195.7 320 43.4
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 5.4e-48 195.7 294 43.9
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 7.0e-48 195.3 230 50.4
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 1.6e-47 194.1 358 40.5
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 1.6e-47 194.1 215 52.6
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 2.7e-47 193.4 238 48.7
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 2.7e-47 193.4 230 50.0
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 3.5e-47 193.0 223 47.5
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 7.8e-47 191.8 203 54.7
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 7.8e-47 191.8 318 41.2
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 1.3e-46 191.0 217 49.8
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 1.7e-46 190.7 211 52.6
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 1.7e-46 190.7 223 46.6
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 6.6e-46 188.7 218 49.1
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 6.6e-46 188.7 235 47.2
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 1.1e-45 188.0 304 42.4
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 1.5e-45 187.6 216 50.5
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 5.6e-45 185.7 304 42.4
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 1.2e-44 184.5 238 45.8
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 1.2e-44 184.5 308 42.2
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 2.1e-44 183.7 243 48.1
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 6.2e-44 182.2 317 41.3
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 8.0e-44 181.8 222 47.7
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 1.1e-43 181.4 224 47.3
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 8.9e-43 178.3 315 40.0
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 7.5e-42 175.3 207 48.3
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 2.9e-41 173.3 269 43.5
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 3.7e-41 172.9 392 36.5
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 1.4e-40 171.0 200 49.5
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 4.1e-40 169.5 304 40.5
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 1.6e-39 167.5 202 49.5
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 2.5e-37 160.2 185 50.8
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 3.6e-36 156.4 210 45.2
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 6.2e-36 155.6 324 42.9
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 1.1e-29 134.8 301 34.2
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.9e-29 134.0 261 36.8
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 1.1e-27 128.3 217 40.1
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 4.0e-27 126.3 214 38.8
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 2.3e-22 110.5 215 36.7
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 6.2e-20 102.4 236 32.2
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 9.9e-18 95.1 125 45.6
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 3.8e-17 93.2 153 39.9
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 3.0e-14 83.6 62 62.9
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 2.5e-13 80.5 85 51.8
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 9.6e-13 78.6 121 39.7
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.6e-12 77.8 105 41.9
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 6.2e-12 75.9 69 62.3
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.1e-12 75.5 183 34.4
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 8.1e-12 75.5 141 39.0
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 9.0e-11 72.0 95 40.0
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 3.4e-10 70.1 102 40.2
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 3.8e-09 66.6 63 50.8
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 3.8e-09 66.6 42 76.2
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 5.4e-08 62.8 55 52.7


User provided reference genes

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