Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50676 Brassica carinata HOM05D004448 ORTHO05D015948 6.1e-190 667.5 393 100.0
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 6.1e-190 667.5 393 100.0
BraA01t01701Z Brassica rapa HOM05D004448 ORTHO05D015948 3.4e-164 582.0 394 86.0
A01p17460 Brassica napus HOM05D004448 ORTHO05D015948 5.4e-162 574.7 396 89.4
BcaNung02444 Brassica carinata HOM05D004448 ORTHO05D015948 1.4e-133 480.3 405 78.8
Sp7g24190 Schrenkiella parvula HOM05D004448 ORTHO05D015948 2.6e-116 422.9 416 64.2
AL7G26800 Arabidopsis lyrata HOM05D004448 ORTHO05D015948 5.3e-101 372.1 412 59.0
Carub.0007s1478 Capsella rubella HOM05D004448 ORTHO05D015948 3.5e-92 342.8 426 62.0
CARHR233700 Cardamine hirsuta HOM05D004448 ORTHO05D015948 6.3e-86 322.0 395 51.1
Thhalv10025245m.g Eutrema salsugineum HOM05D004448 ORTHO05D015948 1.1e-74 284.6 333 53.2
Aa31LG3G540 Aethionema arabicum HOM05D001256 ORTHO05D001141 6.6e-67 258.8 440 45.7
AT4G26170 Arabidopsis thaliana HOM05D004448 ORTHO05D015948 4.4e-63 246.1 315 48.6
AL8G32620 Arabidopsis lyrata HOM05D004448 ORTHO05D005919 1.7e-43 181.0 498 31.1
AT5G56780 Arabidopsis thaliana HOM05D004448 ORTHO05D005919 1.4e-40 171.4 510 34.1
BcaB08g36059 Brassica carinata HOM05D004448 ORTHO05D005919 3.4e-39 166.8 479 30.1
Sp6g18520 Schrenkiella parvula HOM05D004448 ORTHO05D005919 3.4e-39 166.8 485 30.7
BcaC04g20054 Brassica carinata HOM05D004448 ORTHO05D005919 4.4e-39 166.4 485 29.5
C09p48340 Brassica napus HOM05D004448 ORTHO05D005919 4.4e-39 166.4 485 29.5
BolC9t57684H Brassica oleracea HOM05D004448 ORTHO05D005919 1.7e-38 164.5 483 29.4
BraA10t43502Z Brassica rapa HOM05D004448 ORTHO05D005919 3.8e-38 163.3 483 30.2
A10p14110 Brassica napus HOM05D004448 ORTHO05D005919 6.4e-38 162.5 483 30.2
Thhalv10015325m.g Eutrema salsugineum HOM05D004448 ORTHO05D005919 2.4e-37 160.6 449 30.5
Carub.0008s1726 Capsella rubella HOM05D004448 ORTHO05D005919 4.1e-37 159.8 510 32.5
BraA05t19157Z Brassica rapa HOM05D004448 ORTHO05D005919 9.2e-37 158.7 467 30.4
BcaC02g12506 Brassica carinata HOM05D004448 ORTHO05D005919 1.2e-36 158.3 474 29.7
CARHR270530 Cardamine hirsuta HOM05D004448 ORTHO05D005919 2.1e-36 157.5 348 40.2
THA.LOC104813490 Tarenaya hassleriana HOM05D004448 ORTHO05D005919 3.5e-36 156.8 517 32.7
C04p01820 Brassica napus HOM05D004448 ORTHO05D005919 5.6e-34 149.4 468 29.5
BcaC02g12705 Brassica carinata HOM05D004448 ORTHO05D005919 3.6e-33 146.7 462 29.7
Aa31LG3G12720 Aethionema arabicum HOM05D004448 ORTHO05D005919 1.1e-32 145.2 478 29.1
Aa31LG2G21230 Aethionema arabicum HOM05D004448 ORTHO05D005919 6.9e-32 142.5 458 34.1
A05p01610 Brassica napus HOM05D004448 ORTHO05D005919 2.5e-18 97.4 331 29.0
BraA05t19155Z Brassica rapa HOM05D004448 ORTHO05D005919 1.4e-13 81.6 182 29.7
Ciclev10010615m.g Citrus clementina HOM05D004448 ORTHO05D005919 1.9e-10 71.2 222 28.4
Sc18g0001910 Simmondsia chinensis HOM05D004448 ORTHO05D005919 2.1e-09 67.8 121 34.7
Cpa.g.sc7.238 Carica papaya HOM05D004448 ORTHO05D005919 1.1e-08 65.5 126 36.5
Os07g0586700 Oryza sativa ssp. japonica HOM05D004448 ORTHO05D005919 3.8e-06 57.0 174 28.2
AUR62031324 Chenopodium quinoa HOM05D004448 ORTHO05D005919 8.4e-06 55.8 61 39.3
FAN26G0987 Fragaria x ananassa HOM05D004448 ORTHO05D005919 8.4e-06 55.8 113 35.4


User provided reference genes

Program Settings