Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 4.2e-60 234.6 125 100.0
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 1.4e-42 176.4 96 99.0
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 6.8e-42 174.1 96 97.9
C05p13700 Brassica napus HOM05D015232 ORTHO05D015515 3.8e-37 158.3 82 95.1
C08p16110 Brassica napus HOM05D015232 ORTHO05D015515 1.5e-36 156.4 79 96.2
BolC8t49233H Brassica oleracea HOM05D015232 ORTHO05D015515 2.1e-35 152.5 79 94.9
C03p44940 Brassica napus HOM05D015232 ORTHO05D015515 1.1e-31 140.2 70 95.7
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 2.5e-20 102.4 91 68.1
A05p14630 Brassica napus HOM05D015232 ORTHO05D015515 1.5e-17 93.2 96 64.6
BraA05t20393Z Brassica rapa HOM05D015232 ORTHO05D015515 1.5e-17 93.2 47 95.7
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 4.3e-12 75.1 47 85.1
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 4.3e-12 75.1 47 85.1
BolC5t30108H Brassica oleracea HOM05D003829 ORTHO05D028154 2.8e-11 72.4 49 89.8
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 2.0e-09 66.2 55 61.8
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.6e-09 65.9 49 67.3
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 4.4e-09 65.1 48 68.8
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 4.4e-09 65.1 48 68.8
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 4.4e-09 65.1 48 68.8
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 4.4e-09 65.1 48 68.8
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 4.4e-09 65.1 48 66.7
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 4.4e-09 65.1 48 66.7
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 4.4e-09 65.1 48 68.8
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 4.4e-09 65.1 48 68.8
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 5.8e-09 64.7 45 71.1
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 5.8e-09 64.7 48 64.6
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 7.5e-09 64.3 48 64.6
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 7.5e-09 64.3 48 66.7
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 9.9e-09 63.9 48 64.6
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 9.9e-09 63.9 48 64.6
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 9.9e-09 63.9 48 64.6
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 9.9e-09 63.9 45 66.7
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.3e-08 63.5 47 66.0
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 1.3e-08 63.5 48 64.6
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 2.2e-08 62.8 45 68.9
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 2.2e-08 62.8 46 65.2
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.9e-08 62.4 49 69.4
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 3.7e-08 62.0 48 66.7
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.7e-08 62.0 48 62.5
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.7e-08 62.0 48 62.5
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.7e-08 62.0 48 62.5
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 3.7e-08 62.0 48 64.6
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 4.9e-08 61.6 48 64.6
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 4.9e-08 61.6 48 68.8
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 4.9e-08 61.6 48 62.5
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 6.4e-08 61.2 48 68.8
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 8.3e-08 60.8 49 67.3
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 8.3e-08 60.8 45 68.9
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 8.3e-08 60.8 48 68.8
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 8.3e-08 60.8 48 75.0
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 8.3e-08 60.8 48 68.8
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 1.1e-07 60.5 49 65.3
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 1.1e-07 60.5 47 68.1
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.1e-07 60.5 48 68.8
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 1.1e-07 60.5 48 68.8
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 1.1e-07 60.5 48 62.5
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 1.1e-07 60.5 44 65.9
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 1.1e-07 60.5 48 66.7
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.1e-07 60.5 48 68.8
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 1.4e-07 60.1 49 67.3
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 1.4e-07 60.1 48 62.5
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.4e-07 60.1 45 64.4
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.4e-07 60.1 45 64.4
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.4e-07 60.1 45 64.4
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 1.4e-07 60.1 45 66.7
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 1.9e-07 59.7 57 56.1
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.9e-07 59.7 48 64.6
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.9e-07 59.7 46 65.2
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 2.4e-07 59.3 44 63.6
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 2.4e-07 59.3 49 63.3
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 2.4e-07 59.3 47 68.1
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.4e-07 59.3 46 65.2
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.4e-07 59.3 46 65.2
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 2.4e-07 59.3 57 56.1
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 2.4e-07 59.3 55 58.2
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 3.2e-07 58.9 48 64.6
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 3.2e-07 58.9 48 64.6
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 3.2e-07 58.9 48 58.3
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 3.2e-07 58.9 45 71.1
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 3.2e-07 58.9 46 63.0
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.2e-07 58.9 46 63.0
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 3.2e-07 58.9 48 62.5
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 3.2e-07 58.9 45 71.1
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 4.1e-07 58.5 45 68.9
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 4.1e-07 58.5 49 63.3
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 4.1e-07 58.5 49 63.3
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 4.1e-07 58.5 49 63.3
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 4.1e-07 58.5 49 63.3
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 4.1e-07 58.5 48 64.6
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 4.1e-07 58.5 48 60.4
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 5.4e-07 58.2 49 61.2
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 5.4e-07 58.2 57 54.4
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 5.4e-07 58.2 49 63.3
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 7.1e-07 57.8 49 61.2
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 7.1e-07 57.8 45 68.9
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 7.1e-07 57.8 45 68.9
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 7.1e-07 57.8 48 60.4
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 9.2e-07 57.4 49 61.2
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 9.2e-07 57.4 50 62.0
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 1.2e-06 57.0 45 62.2
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.2e-06 57.0 48 64.6
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 1.2e-06 57.0 49 63.3
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 1.6e-06 56.6 45 68.9
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.6e-06 56.6 51 68.6
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.6e-06 56.6 56 51.8
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.1e-06 56.2 44 61.4
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 2.1e-06 56.2 48 58.3
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 2.1e-06 56.2 48 62.5
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.1e-06 56.2 54 57.4
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 2.7e-06 55.8 48 60.4
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 2.7e-06 55.8 57 50.9
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 2.7e-06 55.8 51 60.8
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 2.7e-06 55.8 50 58.0
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 2.7e-06 55.8 50 58.0
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.7e-06 55.8 47 61.7
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.7e-06 55.8 55 52.7
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.7e-06 55.8 57 52.6
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 3.5e-06 55.5 48 58.3
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 6.0e-06 54.7 49 57.1
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.0e-06 54.7 45 62.2
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 6.0e-06 54.7 51 58.8
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 7.8e-06 54.3 49 61.2
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 7.8e-06 54.3 48 56.2
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 7.8e-06 54.3 45 60.0


User provided reference genes

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