Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 4.5e-106 387.9 190 100.0
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 4.5e-106 387.9 190 100.0
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-102 376.3 190 98.4
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 6.8e-102 374.0 190 97.4
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-101 372.9 190 97.4
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.5e-101 372.9 190 97.4
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.5e-101 372.9 190 97.4
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 2.0e-101 372.5 190 96.8
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 2.0e-101 372.5 190 96.8
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 2.2e-100 369.0 190 96.3
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 2.2e-100 369.0 190 96.3
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 3.7e-100 368.2 190 95.3
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 6.3e-100 367.5 190 95.3
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 6.3e-100 367.5 190 96.3
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 1.1e-99 366.7 190 94.2
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-99 366.3 190 95.8
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 1.4e-99 366.3 190 95.8
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-99 366.3 190 95.8
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 1.6e-98 362.8 190 94.2
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 3.8e-97 358.2 190 92.1
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.1e-96 356.7 190 93.2
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 7.2e-96 354.0 190 92.1
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 4.7e-95 351.3 190 91.6
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.5e-93 346.3 190 93.2
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 2.0e-93 345.9 190 87.4
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 8.3e-92 340.5 190 86.3
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.1e-91 340.1 190 86.3
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.8e-91 339.3 190 85.8
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 2.4e-91 339.0 190 85.8
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 3.2e-91 338.6 190 85.8
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 4.1e-91 338.2 190 85.3
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 5.4e-91 337.8 190 84.7
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 5.4e-91 337.8 190 84.7
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 5.4e-91 337.8 190 85.8
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 9.2e-91 337.0 190 85.8
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 9.2e-91 337.0 189 85.2
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 1.2e-90 336.7 190 84.7
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 2.0e-90 335.9 190 85.3
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 2.7e-90 335.5 190 84.7
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 4.6e-90 334.7 190 83.7
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 4.6e-90 334.7 190 85.3
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 7.8e-90 334.0 190 84.2
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 1.0e-89 333.6 190 84.2
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 1.3e-89 333.2 190 85.8
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 1.3e-89 333.2 190 84.7
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 2.9e-89 332.0 190 83.2
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 2.9e-89 332.0 190 84.2
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 2.9e-89 332.0 190 83.2
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.9e-89 332.0 190 84.2
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 3.9e-89 331.6 190 85.8
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 5.0e-89 331.3 190 85.3
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 6.6e-89 330.9 190 85.8
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 8.6e-89 330.5 190 83.2
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 1.5e-88 329.7 190 85.3
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 2.5e-88 328.9 190 84.7
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.5e-88 328.9 190 83.7
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 3.3e-88 328.6 190 84.7
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 3.3e-88 328.6 190 83.2
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 5.6e-88 327.8 190 84.2
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 5.6e-88 327.8 190 84.2
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 7.3e-88 327.4 190 83.2
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 7.3e-88 327.4 190 82.1
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 83.0
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 2.1e-87 325.9 181 85.6
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.8e-87 325.5 190 82.6
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 2.8e-87 325.5 190 81.1
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 2.8e-87 325.5 190 81.1
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 2.8e-87 325.5 190 82.1
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 6.1e-87 324.3 190 83.7
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 6.1e-87 324.3 190 83.7
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.9
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.9
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 81.9
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 190 83.2
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 190 83.2
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.0e-86 323.6 190 83.2
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 1.4e-86 323.2 190 84.2
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 81.9
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-86 323.2 190 82.6
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 1.4e-86 323.2 190 82.1
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 3.1e-86 322.0 190 83.2
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 5.2e-86 321.2 188 81.4
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 5.2e-86 321.2 190 81.1
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 6.8e-86 320.9 190 83.2
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 6.8e-86 320.9 190 82.1
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.2e-85 320.1 190 80.0
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 7.5e-85 317.4 190 82.6
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 7.5e-85 317.4 190 83.2
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 9.8e-85 317.0 190 80.5
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 1.7e-84 316.2 190 80.0
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 2.2e-84 315.8 182 84.6
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 8.3e-84 313.9 190 81.6
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.1e-83 313.5 190 82.1
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.4e-83 313.2 190 80.5
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.9e-83 312.8 190 80.5
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 2.4e-83 312.4 190 79.5
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.1e-83 311.6 190 78.9
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 4.1e-83 311.6 190 81.1
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 4.1e-83 311.6 190 81.1
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 4.1e-83 311.6 190 81.1
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 5.4e-83 311.2 190 78.4
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 7.0e-83 310.8 190 80.0
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 7.0e-83 310.8 190 80.5
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 9.2e-83 310.5 190 78.4
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 9.2e-83 310.5 190 80.0
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 2.0e-82 309.3 190 78.9
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 3.5e-82 308.5 190 78.4
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 3.5e-82 308.5 190 78.4
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 1.3e-81 306.6 190 79.5
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 5.0e-81 304.7 191 79.1
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 2.5e-80 302.4 190 79.5
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 3.3e-80 302.0 190 76.8
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 9.5e-80 300.4 191 80.1
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 9.5e-80 300.4 191 80.1
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.2e-79 300.1 171 83.0
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.2e-79 300.1 176 82.4
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 3.6e-79 298.5 182 78.0
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 6.2e-79 297.7 190 76.8
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.1e-78 297.0 191 79.1
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 2.3e-78 295.8 190 75.8
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 4.0e-78 295.0 190 75.8
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 4.0e-78 295.0 190 74.7
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 6.8e-78 294.3 191 79.1
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 1.2e-77 293.5 190 75.8
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 1.2e-77 293.5 191 78.5
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 8.3e-76 287.3 179 82.7
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 5.4e-75 284.6 190 74.2
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 2.1e-74 282.7 190 74.2
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 1.7e-73 279.6 179 75.4
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 8.6e-73 277.3 179 74.3
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 7.3e-72 274.2 190 70.5
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 7.3e-72 274.2 190 70.5
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 2.1e-71 272.7 190 68.9
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 2.8e-71 272.3 190 67.4
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.6e-71 271.9 190 74.2
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 6.8e-70 267.7 190 72.6
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 8.9e-70 267.3 190 68.9
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.2e-69 266.9 190 73.2
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 2.6e-69 265.8 190 65.8
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 7.1e-67 257.7 189 65.6
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 3.0e-65 252.3 189 64.0
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 1.9e-64 249.6 183 68.9
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 4.3e-64 248.4 189 63.0
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 1.1e-59 233.8 167 71.9
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.9e-59 233.0 190 55.8
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 5.4e-59 231.5 179 61.5
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 2.0e-53 213.0 190 59.5
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-46 190.7 123 74.8
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 1.4e-46 190.3 189 49.7
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 1.1e-43 180.6 109 79.8
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 7.1e-43 177.9 115 73.9
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 1.9e-40 169.9 123 72.4
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 3.3e-40 169.1 190 52.1
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 5.6e-40 168.3 173 56.1
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.2e-39 164.9 85 91.8
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 9.3e-35 151.0 129 59.7
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 2.4e-30 136.3 78 82.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.0e-29 133.3 93 75.3
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 8.2e-23 111.3 66 78.8
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 7.9e-10 68.2 35 91.4
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 2.2e-07 60.1 39 69.2


User provided reference genes

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