Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 2.0e-124 449.1 229 100.0
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 3.1e-117 425.2 220 98.6
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 2.7e-113 412.1 220 95.9
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 2.7e-113 412.1 220 95.9
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 2.3e-112 409.1 220 95.5
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 3.0e-112 408.7 221 95.0
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 1.3e-110 403.3 220 94.1
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.6e-110 402.9 212 97.2
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 2.8e-110 402.1 220 93.6
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 4.0e-109 398.3 220 94.1
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 3.4e-108 395.2 215 94.9
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 2.2e-107 392.5 199 99.0
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 1.2e-105 386.7 220 90.5
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 4.3e-103 378.3 220 89.1
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 9.6e-103 377.1 220 88.2
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 2.6e-100 369.0 207 90.8
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.4e-98 363.2 221 84.2
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 6.0e-97 357.8 225 81.3
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 6.3e-94 347.8 179 97.8
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.2e-89 333.6 199 82.9
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 2.1e-89 332.8 219 76.3
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 7.9e-89 330.9 220 77.3
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 7.9e-89 330.9 228 75.0
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.4e-88 330.1 211 80.1
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 1.4e-88 330.1 226 73.9
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.4e-88 330.1 220 78.2
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.8e-88 329.7 222 76.6
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 1.8e-88 329.7 220 78.2
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 3.0e-88 328.9 222 75.7
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 6.7e-88 327.8 219 75.8
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 8.8e-88 327.4 200 82.0
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.1e-87 327.0 210 77.6
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.1e-87 327.0 224 75.0
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.5e-87 326.6 220 77.3
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.0e-87 326.2 218 76.6
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.0e-87 326.2 219 75.3
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 2.5e-87 325.9 219 75.3
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 4.3e-87 325.1 220 75.9
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 4.3e-87 325.1 225 75.1
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 4.3e-87 325.1 224 74.6
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 4.3e-87 325.1 222 75.2
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 4.3e-87 325.1 219 75.8
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 7.4e-87 324.3 220 76.4
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 7.4e-87 324.3 197 81.2
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 7.4e-87 324.3 220 75.5
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 9.7e-87 323.9 220 76.4
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 1.7e-86 323.2 211 76.8
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.7e-86 323.2 223 76.2
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.7e-86 323.2 201 80.1
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.7e-86 323.2 219 74.9
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.7e-86 323.2 219 74.9
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.7e-86 323.2 219 74.9
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 2.2e-86 322.8 212 79.7
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 2.8e-86 322.4 211 76.3
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 3.7e-86 322.0 222 75.2
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 4.8e-86 321.6 220 76.4
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 4.8e-86 321.6 224 73.7
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 4.8e-86 321.6 220 75.5
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 6.3e-86 321.2 219 73.5
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 6.3e-86 321.2 228 73.2
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 8.2e-86 320.9 187 84.0
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 8.2e-86 320.9 211 76.3
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 1.1e-85 320.5 221 73.8
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 1.1e-85 320.5 211 77.7
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 1.4e-85 320.1 224 74.6
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 1.8e-85 319.7 227 71.8
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 2.4e-85 319.3 219 72.6
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 2.4e-85 319.3 198 80.8
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 2.4e-85 319.3 228 72.8
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 2.4e-85 319.3 211 77.3
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 3.1e-85 318.9 210 78.1
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 5.3e-85 318.2 220 75.0
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 6.9e-85 317.8 223 74.0
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 2.0e-84 316.2 201 78.6
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 4.5e-84 315.1 211 75.8
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 4.5e-84 315.1 221 71.9
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 7.7e-84 314.3 219 73.1
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 7.7e-84 314.3 212 75.0
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 7.7e-84 314.3 224 71.4
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.3e-83 313.5 211 73.9
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.7e-83 313.2 211 75.4
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 2.2e-83 312.8 219 72.6
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 3.8e-83 312.0 228 69.7
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 5.0e-83 311.6 220 71.8
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 5.0e-83 311.6 210 74.8
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 6.5e-83 311.2 221 71.0
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 8.5e-83 310.8 211 73.5
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 8.5e-83 310.8 226 71.2
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.1e-82 310.5 203 74.9
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 1.1e-82 310.5 211 73.9
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 1.9e-82 309.7 211 73.9
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.2e-82 308.9 211 74.4
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 4.2e-82 308.5 225 70.2
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 5.5e-82 308.1 194 77.8
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 5.5e-82 308.1 242 67.8
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.7e-81 305.1 226 70.8
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 2.3e-80 302.8 219 68.5
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 2.3e-80 302.8 228 69.7
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 3.0e-80 302.4 176 81.2
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 3.0e-80 302.4 212 70.8
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 8.8e-80 300.8 217 71.4
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 1.1e-79 300.4 210 71.9
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 2.0e-79 299.7 212 70.3
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.8e-78 295.8 212 75.0
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 3.7e-78 295.4 219 67.6
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 3.6e-73 278.9 212 62.7
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 4.7e-73 278.5 211 68.2
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 5.2e-72 275.0 170 74.1
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 2.2e-70 269.6 209 64.1
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 1.1e-69 267.3 200 70.0
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 2.4e-61 239.6 179 61.5
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 3.0e-56 222.6 174 59.8
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.2e-49 200.7 131 74.8
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.7e-47 191.8 149 65.1
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.8e-45 186.8 111 80.2
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 9.2e-45 184.5 216 45.8
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.4e-40 170.6 215 43.7
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 2.6e-23 113.2 187 35.3
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.9e-19 99.4 75 70.7
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 9.6e-18 94.7 77 64.9
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.4e-16 90.1 56 76.8
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 5.4e-13 79.0 61 62.3
Mapoly0040s0096 Marchantia polymorpha HOM05D002933 ORTHO05D007742 9.0e-08 61.6 205 25.9
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 9.0e-08 61.6 208 25.0
PGR142G1118 Punica granatum HOM05D002933 ORTHO05D009221 1.2e-07 61.2 218 25.7
Ciclev10032629m.g Citrus clementina HOM05D002933 ORTHO05D009221 2.6e-07 60.1 214 24.8
HanXRQChr07g0200961 Helianthus annuus HOM05D002933 ORTHO05D009221 4.4e-07 59.3 219 26.0
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 5.8e-07 58.9 223 26.9
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 5.8e-07 58.9 217 25.8
Duzib114G0802 Durio zibethinus HOM05D002933 ORTHO05D009221 1.3e-06 57.8 215 26.5
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 1.3e-06 57.8 180 25.6
TAR369G0833 Trochodendron aralioides HOM05D002933 ORTHO05D009221 1.3e-06 57.8 206 25.7
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 1.7e-06 57.4 207 24.6
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 1.7e-06 57.4 217 25.3
Sed0025549 Sechium edule HOM05D002933 ORTHO05D009221 1.7e-06 57.4 212 24.5
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 2.2e-06 57.0 220 25.5
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 2.2e-06 57.0 228 25.4
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 2.9e-06 56.6 218 26.1
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 2.9e-06 56.6 218 24.8
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 2.9e-06 56.6 214 24.3
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 2.9e-06 56.6 220 25.9
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 3.8e-06 56.2 216 25.9
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 3.8e-06 56.2 208 23.6
Nn3g20127 Nelumbo nucifera HOM05D002933 ORTHO05D009221 3.8e-06 56.2 213 26.8
Prupe.2G229200 Prunus persica HOM05D002933 ORTHO05D009221 3.8e-06 56.2 218 25.7
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 3.8e-06 56.2 220 24.5
Lalb_Chr21g0307341 Lupinus albus HOM05D002933 ORTHO05D009221 4.9e-06 55.8 214 23.8
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 6.4e-06 55.5 216 25.5
Atru.chr12.545 Acer truncatum HOM05D002933 ORTHO05D009221 8.4e-06 55.1 213 24.4
Ca_11296_v3 Cicer arietinum L. HOM05D002933 ORTHO05D009221 8.4e-06 55.1 207 25.6
Sopen10g024330 Solanum pennellii HOM05D002933 ORTHO05D009221 8.4e-06 55.1 212 24.5


User provided reference genes

Program Settings