Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 2.1e-152 542.3 277 100.0
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 8.8e-135 483.8 251 98.8
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 8.3e-125 450.7 252 94.0
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.6e-120 436.4 251 91.6
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 3.4e-118 428.7 251 90.4
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 4.4e-118 428.3 251 88.8
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 4.4e-118 428.3 251 89.6
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 7.5e-118 427.6 251 88.8
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 6.4e-117 424.5 251 88.0
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 6.6e-114 414.5 251 86.5
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 2.2e-109 399.4 251 84.5
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 1.6e-107 393.3 199 99.0
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 4.4e-102 375.2 256 78.9
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 7.6e-102 374.4 257 79.0
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 5.6e-97 358.2 232 80.6
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 2.4e-95 352.8 251 76.1
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 1.6e-91 340.1 273 69.6
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 6.6e-90 334.7 186 89.8
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.7e-85 320.1 249 69.1
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.5e-81 307.0 186 81.2
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 8.1e-80 301.2 244 66.4
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 8.1e-80 301.2 199 76.4
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 8.1e-80 301.2 190 78.4
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.1e-79 300.8 198 77.3
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.1e-79 300.8 179 83.8
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.1e-79 300.8 203 74.9
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.1e-79 300.8 194 77.8
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 1.4e-79 300.4 191 80.1
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 1.4e-79 300.4 212 70.8
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 2.4e-79 299.7 189 78.3
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 2.4e-79 299.7 191 78.0
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 2.4e-79 299.7 242 69.0
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 3.1e-79 299.3 202 74.8
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 4.0e-79 298.9 192 77.6
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 9.0e-79 297.7 177 81.9
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 9.0e-79 297.7 189 78.3
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.2e-78 297.4 219 72.1
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.2e-78 297.4 248 64.5
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 1.5e-78 297.0 249 63.9
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.5e-78 297.0 181 80.7
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.5e-78 297.0 248 64.5
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 1.5e-78 297.0 248 64.5
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 2.0e-78 296.6 261 63.6
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 2.0e-78 296.6 219 72.1
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.0e-78 296.6 233 67.8
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 3.4e-78 295.8 252 65.9
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 4.5e-78 295.4 255 66.3
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 5.8e-78 295.0 200 74.5
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 5.8e-78 295.0 203 72.4
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 7.6e-78 294.7 229 69.9
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 9.9e-78 294.3 198 73.7
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 9.9e-78 294.3 244 67.6
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 1.3e-77 293.9 190 76.8
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 1.7e-77 293.5 214 72.9
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 1.7e-77 293.5 244 64.3
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 1.7e-77 293.5 191 77.5
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 1.7e-77 293.5 226 68.6
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 2.2e-77 293.1 222 69.8
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 2.2e-77 293.1 226 68.1
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 2.9e-77 292.7 218 68.8
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 2.9e-77 292.7 178 81.5
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 2.9e-77 292.7 178 81.5
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 3.8e-77 292.4 254 62.6
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 3.8e-77 292.4 252 65.1
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 3.8e-77 292.4 245 66.9
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 4.9e-77 292.0 167 84.4
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 4.9e-77 292.0 202 74.8
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 4.9e-77 292.0 243 64.6
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 1.1e-76 290.8 218 67.9
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.1e-76 290.8 239 65.7
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 1.1e-76 290.8 235 64.3
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 1.9e-76 290.0 224 66.5
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 5.5e-76 288.5 191 75.9
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 1.6e-75 287.0 226 67.3
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 1.6e-75 287.0 242 64.0
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 2.1e-75 286.6 191 73.8
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 3.5e-75 285.8 206 69.9
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 4.6e-75 285.4 230 65.7
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 4.6e-75 285.4 213 68.1
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 6.0e-75 285.0 192 73.4
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 6.0e-75 285.0 233 63.9
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 7.9e-75 284.6 191 73.8
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.0e-74 284.3 206 69.4
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 1.3e-74 283.9 240 64.2
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 2.3e-74 283.1 238 63.4
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 3.0e-74 282.7 191 72.8
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.9e-74 282.3 191 73.3
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 5.1e-74 282.0 183 74.3
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 6.7e-74 281.6 191 73.3
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 8.7e-74 281.2 235 63.8
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.1e-73 280.8 241 63.1
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.1e-73 280.8 202 69.8
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.5e-73 280.4 199 71.4
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 3.3e-73 279.3 204 67.6
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 3.3e-73 279.3 210 66.7
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 5.6e-73 278.5 206 66.0
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 7.4e-73 278.1 189 72.5
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.6e-72 276.9 248 61.7
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.8e-72 276.2 197 70.1
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.7e-72 275.8 244 64.3
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 3.7e-72 275.8 192 70.3
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 2.4e-71 273.1 191 70.7
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 2.0e-70 270.0 219 67.6
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 2.0e-70 270.0 271 57.9
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 1.7e-69 266.9 252 57.9
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.9e-68 263.5 166 71.7
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 2.5e-68 263.1 192 64.6
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.1e-65 254.2 196 64.3
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.3e-64 250.8 191 67.0
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 5.9e-62 241.9 180 70.6
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.4e-55 220.7 166 60.2
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 4.6e-51 205.7 153 61.4
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.5e-49 200.7 131 74.8
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 6.9e-47 191.8 149 65.1
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 3.3e-41 172.9 193 47.7
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 2.2e-40 170.2 203 44.3
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 1.7e-37 160.6 91 81.3
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 9.1e-23 111.7 171 35.7
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.7e-19 99.4 75 70.7
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.2e-17 94.7 77 64.9
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.8e-16 90.1 56 76.8
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 6.6e-13 79.0 61 62.3


User provided reference genes

Program Settings