Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50225 Brassica carinata HOM05D006348 ORTHO05D008261 1.9e-59 232.3 115 100.0
Sp7g13620 Schrenkiella parvula HOM05D006348 ORTHO05D008261 4.6e-37 157.9 108 77.8
BcaB04g18295 Brassica carinata HOM05D006348 ORTHO05D008261 7.9e-37 157.1 108 75.0
AL7G40130 Arabidopsis lyrata HOM05D006348 ORTHO05D008261 1.0e-36 156.8 108 75.9
AT4G15420 Arabidopsis thaliana HOM05D006348 ORTHO05D008261 1.3e-36 156.4 108 76.9
BcaC07g37884 Brassica carinata HOM05D006348 ORTHO05D008261 5.1e-36 154.5 108 75.9
Thhalv10024806m.g Eutrema salsugineum HOM05D006348 ORTHO05D008261 6.7e-36 154.1 108 75.0
Carub.0007s2651 Capsella rubella HOM05D006348 ORTHO05D008261 1.1e-35 153.3 108 74.1
CARHR222170 Cardamine hirsuta HOM05D006348 ORTHO05D008261 2.5e-35 152.1 108 74.1
A08p11740 Brassica napus HOM05D006348 ORTHO05D008261 5.6e-35 151.0 107 75.7
BraA08t33166Z Brassica rapa HOM05D006348 ORTHO05D008261 5.6e-35 151.0 107 75.7
THA.LOC104820219 Tarenaya hassleriana HOM05D006348 ORTHO05D008261 2.1e-29 132.5 112 64.3
Aa31LG9G2030 Aethionema arabicum HOM05D006348 ORTHO05D008261 2.5e-27 125.6 108 63.0
TAR626G1526 Trochodendron aralioides HOM05D006348 ORTHO05D008261 1.8e-25 119.4 108 60.2
Duzib138G1741 Durio zibethinus HOM05D006348 ORTHO05D008261 2.4e-25 119.0 107 64.5
Thecc.01G178500 Theobroma cacao HOM05D006348 ORTHO05D008261 3.1e-25 118.6 106 60.4
MBI10_g09181_MAGBIO Magnolia biondii HOM05D006348 ORTHO05D008261 4.1e-25 118.2 108 56.5
Potri.014G156300 Populus trichocarpa HOM05D006348 ORTHO05D008261 4.1e-25 118.2 107 61.7
Gorai.001G215600 Gossypium raimondii HOM05D006348 ORTHO05D008261 5.3e-25 117.9 107 63.6
Sabra14G0118200 Salix brachista HOM05D006348 ORTHO05D008261 5.3e-25 117.9 107 60.7
Gohir.A07G186200 Gossypium hirsutum HOM05D006348 ORTHO05D008261 6.9e-25 117.5 107 63.6
Cfa014336 Carpinus fangiana HOM05D006348 ORTHO05D008261 9.0e-25 117.1 108 60.2
Duzib211G0430 Durio zibethinus HOM05D006348 ORTHO05D008261 2.0e-24 115.9 107 63.6
COL.COLO4_21837 Corchorus olitorius HOM05D006348 ORTHO05D008261 2.6e-24 115.5 106 64.2
Gohir.D07G192700 Gossypium hirsutum HOM05D006348 ORTHO05D008261 2.6e-24 115.5 107 62.6
CiPaw.03G157500 Carya illinoinensis HOM05D006348 ORTHO05D008261 4.5e-24 114.8 108 59.3
Dinv39735 Davidia involucrata HOM05D006348 ORTHO05D008261 5.9e-24 114.4 108 58.3
QL08p031358 Quercus lobata HOM05D006348 ORTHO05D008261 5.9e-24 114.4 108 58.3
Haze_12795 Corylus avellana HOM05D006348 ORTHO05D008261 7.6e-24 114.0 106 60.4
Prupe.3G213300 Prunus persica HOM05D006348 ORTHO05D008261 1.0e-23 113.6 108 59.3
TWI36G0479 Tripterygium wilfordii HOM05D006348 ORTHO05D008261 1.0e-23 113.6 111 59.5
Cpa.g.sc87.110 Carica papaya HOM05D006348 ORTHO05D008261 1.3e-23 113.2 108 57.4
Cc05_g03430 Coffea canephora HOM05D006348 ORTHO05D008261 1.3e-23 113.2 108 58.3
MD09G1071000 Malus domestica HOM05D006348 ORTHO05D008261 1.3e-23 113.2 108 59.3
Dinv08741 Davidia involucrata HOM05D006348 ORTHO05D008261 1.7e-23 112.8 108 58.3
TAR624G0809 Trochodendron aralioides HOM05D006348 ORTHO05D008261 1.7e-23 112.8 108 56.5
Lj8C128T10 Lonicera japonica HOM05D006348 ORTHO05D008261 2.2e-23 112.5 108 56.5
CANSAT64G0250 Cannabis sativa HOM05D006348 ORTHO05D008261 2.9e-23 112.1 108 58.3
Eucgr.A01106 Eucalyptus grandis HOM05D006348 ORTHO05D008261 2.9e-23 112.1 108 56.5
Rhsim04G0052100 Rhododendron simsii HOM05D006348 ORTHO05D008261 2.9e-23 112.1 108 57.4
arahy.Tifrunner.gnm1.ann1.156AYJ Arachis hypogaea HOM05D006348 ORTHO05D008261 3.8e-23 111.7 111 55.0
arahy.Tifrunner.gnm1.ann1.ZG31ZK Arachis hypogaea HOM05D006348 ORTHO05D008261 3.8e-23 111.7 111 55.0
MD17G1101600 Malus domestica HOM05D006348 ORTHO05D008261 3.8e-23 111.7 108 59.3
Nn1g07240 Nelumbo nucifera HOM05D006348 ORTHO05D008261 3.8e-23 111.7 108 52.8
TWI18G0943 Tripterygium wilfordii HOM05D006348 ORTHO05D008261 3.8e-23 111.7 107 58.9
FvH4_6g42660 Fragaria vesca HOM05D006348 ORTHO05D008261 6.5e-23 110.9 108 59.3
FAN02G0418 Fragaria x ananassa HOM05D006348 ORTHO05D008261 6.5e-23 110.9 108 59.3
FAN14G5544 Fragaria x ananassa HOM05D006348 ORTHO05D008261 6.5e-23 110.9 108 59.3
Lalb_Chr17g0347351 Lupinus albus HOM05D006348 ORTHO05D008261 6.5e-23 110.9 110 51.8
Actinidia10810 Actinidia chinensis HOM05D006348 ORTHO05D008261 8.4e-23 110.5 108 55.6
ClCG02G002100 Citrullus lanatus HOM05D006348 ORTHO05D008261 8.4e-23 110.5 108 56.5
CSS0029476 Camellia sinensis var. sinensis HOM05D006348 ORTHO05D008261 1.1e-22 110.2 108 54.6
Glyma.02G271100 Glycine max HOM05D006348 ORTHO05D008261 1.1e-22 110.2 110 53.6
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 1.1e-22 110.2 108 54.6
Peaxi162Scf00921g00016 Petunia axillaris HOM05D006348 ORTHO05D008261 1.1e-22 110.2 108 55.6
RcHm_v2.0_Chr2g0158561 Rosa chinensis HOM05D006348 ORTHO05D008261 1.1e-22 110.2 108 58.3
CSS0003775 Camellia sinensis var. sinensis HOM05D006348 ORTHO05D008261 1.4e-22 109.8 108 55.6
CSS0037472 Camellia sinensis var. sinensis HOM05D006348 ORTHO05D008261 1.4e-22 109.8 108 55.6
Hma1.2p1_0895F.1_g233740 Hydrangea macrophylla HOM05D006348 ORTHO05D008261 1.4e-22 109.8 108 55.6
Ca_06123_v3 Cicer arietinum L. HOM05D006348 ORTHO05D008261 1.9e-22 109.4 111 54.1
Manes.13G068300 Manihot esculenta HOM05D006348 ORTHO05D008261 2.5e-22 109.0 107 56.1
CsaV3_7G003400 Cucumis sativus L. HOM05D006348 ORTHO05D008261 3.2e-22 108.6 108 53.7
Oeu036738.2 Olea europaea HOM05D006348 ORTHO05D008261 3.2e-22 108.6 108 55.6
Atru.chr6.3231 Acer truncatum HOM05D006348 ORTHO05D008261 4.2e-22 108.2 108 55.6
Sc12g0002190 Simmondsia chinensis HOM05D006348 ORTHO05D008261 4.2e-22 108.2 108 56.5
PGSC0003DMG400006141 Solanum tuberosum HOM05D006348 ORTHO05D008261 4.2e-22 108.2 108 53.7
TPR.G31828 Trifolium pratense HOM05D006348 ORTHO05D008261 5.5e-22 107.8 110 51.8
vmacro09350 Vaccinium macrocarpon HOM05D006348 ORTHO05D008261 5.5e-22 107.8 108 56.5
FAN09G4439 Fragaria x ananassa HOM05D006348 ORTHO05D008261 7.2e-22 107.5 106 58.5
Medtr5g086350 Medicago truncatula HOM05D006348 ORTHO05D008261 9.3e-22 107.1 110 53.6
PGR042G0134 Punica granatum HOM05D006348 ORTHO05D008261 9.3e-22 107.1 110 54.5
MELO3C018834.2 Cucumis melo HOM05D006348 ORTHO05D008261 1.2e-21 106.7 108 53.7
HanXRQChr04g0126961 Helianthus annuus HOM05D006348 ORTHO05D008261 1.2e-21 106.7 111 53.2
Nitab4.5_0004358g0010 Nicotiana tabacum HOM05D006348 ORTHO05D008261 1.2e-21 106.7 108 56.5
MSTRG.14145 Avicennia marina HOM05D006348 ORTHO05D008261 2.1e-21 105.9 110 56.4
LjContig00564g0027462 Lotus japonicus HOM05D006348 ORTHO05D008261 2.1e-21 105.9 110 50.0
Sed0018470 Sechium edule HOM05D006348 ORTHO05D008261 2.1e-21 105.9 108 55.6
Sopen07g024550 Solanum pennellii HOM05D006348 ORTHO05D008261 2.1e-21 105.9 108 53.7
EL10Ac5g11991 Beta vulgaris HOM05D006348 ORTHO05D008261 2.7e-21 105.5 107 53.3
DCAR_021152 Daucus carota HOM05D006348 ORTHO05D008261 2.7e-21 105.5 109 53.2
Migut.H01230 Erythranthe guttata HOM05D006348 ORTHO05D008261 2.7e-21 105.5 107 53.3
Nitab4.5_0004215g0010 Nicotiana tabacum HOM05D006348 ORTHO05D008261 4.6e-21 104.8 108 55.6
Psat2g024240 Pisum sativum HOM05D006348 ORTHO05D008261 4.6e-21 104.8 108 51.9
Ah.12g055590 Amaranthus hybridus HOM05D006348 ORTHO05D008261 6.1e-21 104.4 108 50.9
Glyma.14G046100 Glycine max HOM05D006348 ORTHO05D008261 6.1e-21 104.4 110 51.8
Aqoxy1G03030 Aquilegia oxysepala HOM05D006348 ORTHO05D008261 7.9e-21 104.0 107 53.3
Phvul.008G210900 Phaseolus vulgaris HOM05D006348 ORTHO05D008261 7.9e-21 104.0 110 52.7
Ciclev10014751m.g Citrus clementina HOM05D006348 ORTHO05D008261 1.3e-20 103.2 110 51.8
Os01g0534800 Oryza sativa ssp. japonica HOM05D006348 ORTHO05D008261 1.8e-20 102.8 107 51.4
AUR62007368 Chenopodium quinoa HOM05D006348 ORTHO05D008261 2.3e-20 102.4 107 53.3
SGA_v2.0_scaffold159G37573 Striga asiatica HOM05D006348 ORTHO05D008261 2.3e-20 102.4 109 56.9
PSO675G6007 Papaver somniferum HOM05D006348 ORTHO05D008261 3.0e-20 102.1 108 54.6
CAN.G1911.1 Capsicum annuum HOM05D006348 ORTHO05D008261 8.7e-20 100.5 109 49.5
VMungo0647G0907 Vigna mungo HOM05D006348 ORTHO05D008261 1.1e-19 100.1 110 50.9
C01p27590 Brassica napus HOM05D006348 ORTHO05D008261 1.5e-19 99.8 85 64.7
AUR62018621 Chenopodium quinoa HOM05D006348 ORTHO05D008261 1.5e-19 99.8 107 51.4
Zm00001eb341970 Zea mays HOM05D006348 ORTHO05D008261 1.5e-19 99.8 107 50.5
Hund11167 Selenicereus undatus HOM05D006348 ORTHO05D008261 1.9e-19 99.4 106 49.1
Solyc07g048120.3 Solanum lycopersicum HOM05D006348 ORTHO05D008261 1.9e-19 99.4 108 50.0
Rhsim04G0048100 Rhododendron simsii HOM05D006348 ORTHO05D001595 3.3e-19 98.6 109 50.5
ECA236G2571 Erigeron canadensis HOM05D006348 ORTHO05D008261 5.7e-19 97.8 110 51.8
BraA01t02132Z Brassica rapa HOM05D006348 ORTHO05D008261 7.4e-19 97.4 53 94.3
PSO541G1617 Papaver somniferum HOM05D006348 ORTHO05D008261 9.7e-19 97.1 106 53.8
BolC1t02695H Brassica oleracea HOM05D006348 ORTHO05D008261 2.2e-18 95.9 85 62.4
Lsat_1_v5_gn_7_93060 Lactuca sativa HOM05D006348 ORTHO05D008261 2.2e-18 95.9 112 51.8
CDE09G1141 Ceratophyllum demersum HOM05D006348 ORTHO05D008261 8.2e-18 94.0 83 55.4
unitig_26.g9928 Utricularia gibba HOM05D006348 ORTHO05D008261 1.8e-17 92.8 109 48.6
HPP92_008160 Vanilla planifolia HOM05D006348 ORTHO05D008261 1.8e-17 92.8 108 46.3
SEGI_24298 Sequoiadendron giganteum HOM05D006348 ORTHO05D008261 2.0e-16 89.4 122 41.8
SHI24912 Sapria himalayana HOM05D006348 ORTHO05D008261 5.9e-16 87.8 105 45.7
ATR0681G302 Amborella trichopoda HOM05D006348 ORTHO05D008261 5.0e-15 84.7 108 45.4
AagrBONN_evm.TU.Sc2ySwM_117.1334 Anthoceros agrestis HOM05D006348 ORTHO05D008261 5.1e-12 74.7 83 48.2
TAR371G0220 Trochodendron aralioides HOM05D006348 ORTHO05D008261 3.4e-08 62.0 75 52.0
Mapoly0005s0132 Marchantia polymorpha HOM05D006348 ORTHO05D008261 5.9e-08 61.2 116 40.5
Psat2g024160 Pisum sativum HOM05D006348 ORTHO05D008261 2.9e-07 58.9 56 50.0
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 1.1e-06 57.0 97 39.2


User provided reference genes

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