Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 3.5e-76 288.5 178 100.0
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 2.3e-67 259.2 185 89.7
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 6.6e-67 257.7 185 90.3
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 2.5e-66 255.8 185 89.2
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 1.1e-61 240.4 180 86.1
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 5.8e-55 218.0 189 76.2
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 7.1e-53 211.1 179 78.2
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 1.0e-51 207.2 187 73.3
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 1.8e-51 206.5 190 73.2
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 9.6e-50 200.7 187 73.8
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 2.0e-47 193.0 192 74.0
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 2.6e-47 192.6 192 74.0
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 8.4e-46 187.6 189 71.4
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 2.4e-45 186.0 192 72.9
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 7.1e-45 184.5 192 72.4
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 9.3e-45 184.1 190 71.1
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 1.6e-44 183.3 192 72.4
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 2.1e-41 172.9 178 69.1
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 2.5e-26 122.9 96 97.9
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 3.7e-25 119.0 178 56.7
BcaC01g01787 Brassica carinata HOM05D004667 ORTHO05D032196 1.8e-24 116.7 110 62.7
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 6.9e-24 114.8 145 51.0
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 6.9e-24 114.8 145 51.0
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 1.2e-23 114.0 173 41.0
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 1.4e-21 107.1 173 41.0
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 1.9e-21 106.7 172 38.4
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 2.5e-21 106.3 173 40.5
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 4.2e-21 105.5 183 41.0
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 5.5e-21 105.1 172 41.9
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 5.5e-21 105.1 176 40.9
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 5.5e-21 105.1 175 40.6
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 5.5e-21 105.1 178 41.0
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 7.2e-21 104.8 178 41.6
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 1.2e-20 104.0 175 39.4
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 2.1e-20 103.2 175 39.4
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 3.6e-20 102.4 176 40.3
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 6.1e-20 101.7 183 42.6
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 1.0e-19 100.9 179 36.9
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 1.0e-19 100.9 175 38.3
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 1.4e-19 100.5 173 37.6
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 3.0e-19 99.4 184 47.3
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 3.0e-19 99.4 177 38.4
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 3.0e-19 99.4 167 38.9
C03p71870 Brassica napus HOM05D004667 ORTHO05D032196 5.1e-19 98.6 95 62.1
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 5.1e-19 98.6 179 46.4
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 5.1e-19 98.6 172 37.8
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 6.7e-19 98.2 180 38.3
BolC3t19480H Brassica oleracea HOM05D004667 ORTHO05D032196 8.8e-19 97.8 74 71.6
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 1.1e-18 97.4 174 37.9
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 1.1e-18 97.4 175 38.9
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 1.5e-18 97.1 175 37.7
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 2.0e-18 96.7 174 37.9
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 3.3e-18 95.9 184 47.8
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 4.4e-18 95.5 172 38.4
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 5.7e-18 95.1 177 39.0
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 7.4e-18 94.7 175 53.7
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 7.4e-18 94.7 170 40.0
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 2.2e-17 93.2 170 39.4
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 3.7e-17 92.4 175 37.1
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 6.3e-17 91.7 178 37.6
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.1e-16 90.9 179 36.9
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 1.4e-16 90.5 175 43.4
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 1.8e-16 90.1 172 36.6
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 1.8e-16 90.1 174 36.8
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.8e-16 90.1 173 37.0
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 3.1e-16 89.4 176 40.9
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 3.1e-16 89.4 177 38.4
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 5.9e-15 85.1 178 36.0
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 5.9e-15 85.1 172 36.0
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 1.0e-14 84.3 174 47.7
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.3e-14 84.0 169 35.5
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 2.2e-14 83.2 176 34.7
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.2e-14 83.2 179 35.8
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 3.8e-14 82.4 180 32.8
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 5.0e-14 82.0 176 34.7
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 5.0e-14 82.0 178 35.4
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 8.5e-14 81.3 179 39.7
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 8.5e-14 81.3 177 33.3
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 8.5e-14 81.3 184 32.1
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 8.5e-14 81.3 167 37.1
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 1.9e-13 80.1 179 34.1
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 3.2e-13 79.3 176 34.1
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 5.5e-13 78.6 180 31.7
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 1.2e-12 77.4 183 32.8
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.7e-12 76.3 178 29.8
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 6.1e-12 75.1 178 33.1
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 2.6e-10 69.7 174 38.5
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 2.6e-10 69.7 181 30.4
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 3.3e-10 69.3 180 32.8
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 4.4e-10 68.9 169 32.5
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 4.4e-10 68.9 182 29.1
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 9.7e-10 67.8 174 31.0
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 9.7e-10 67.8 175 30.9
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 2.2e-09 66.6 188 29.8
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 2.2e-09 66.6 169 32.5
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 2.8e-09 66.2 173 30.1
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 2.8e-09 66.2 176 46.0
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 8.2e-09 64.7 174 47.1
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 8.2e-09 64.7 173 35.3
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 1.1e-08 64.3 175 30.3
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 1.1e-08 64.3 175 30.9
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.4e-08 63.9 169 32.5
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.4e-08 63.9 170 29.4
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 1.8e-08 63.5 189 27.5
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 1.8e-08 63.5 177 45.2
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 3.1e-08 62.8 173 35.3
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 5.3e-08 62.0 40 72.5
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 5.3e-08 62.0 40 72.5
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 5.3e-08 62.0 179 30.7
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 5.3e-08 62.0 173 30.1
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 5.3e-08 62.0 175 29.1
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 5.3e-08 62.0 177 45.2
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 5.3e-08 62.0 173 28.3
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 7.0e-08 61.6 177 26.6
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 7.0e-08 61.6 171 30.4
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 9.1e-08 61.2 187 27.8
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 9.1e-08 61.2 178 29.2
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 9.1e-08 61.2 180 46.7
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 9.1e-08 61.2 173 26.0
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 9.1e-08 61.2 177 45.2
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 1.2e-07 60.8 176 28.4
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 1.2e-07 60.8 129 35.7
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 1.6e-07 60.5 181 27.6
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.0e-07 60.1 176 25.0
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.0e-07 60.1 152 32.9
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 2.6e-07 59.7 40 70.0
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.5e-07 59.3 179 24.6
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 3.5e-07 59.3 166 28.3
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 4.5e-07 58.9 175 27.4
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 5.9e-07 58.5 180 46.1
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 7.7e-07 58.2 174 39.1
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 1.0e-06 57.8 177 27.1
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.0e-06 57.8 191 26.2
BolC3t19479H Brassica oleracea HOM05D004667 ORTHO05D005522 1.3e-06 57.4 37 75.7
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 1.7e-06 57.0 180 43.3
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.2e-06 56.6 123 34.1
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 3.8e-06 55.8 174 27.0


User provided reference genes

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