Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49809 Brassica carinata HOM05D003893 ORTHO05D017260 1.8e-63 245.7 122 100.0
C01p32750 Brassica napus HOM05D003893 ORTHO05D017260 4.4e-62 241.1 119 100.0
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 4.9e-53 211.1 115 92.2
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 4.9e-53 211.1 115 92.2
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 7.0e-52 207.2 120 88.3
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 6.6e-50 200.7 115 87.8
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 7.3e-49 197.2 122 83.6
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 2.1e-48 195.7 115 86.1
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 6.2e-48 194.1 120 80.0
A01p25860 Brassica napus HOM05D003893 ORTHO05D017260 1.1e-47 193.4 103 93.2
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 1.1e-47 193.4 120 81.7
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 2.3e-47 192.2 120 80.0
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 5.2e-47 191.0 120 80.0
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 2.9e-45 185.3 120 79.2
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 3.2e-44 181.8 120 75.8
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 2.1e-43 179.1 120 78.3
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 4.7e-32 141.4 120 63.3
BolC1t03210H Brassica oleracea HOM05D003893 ORTHO05D017260 2.4e-31 139.0 71 97.2
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 1.9e-25 119.4 116 52.6
BcaB04g18068 Brassica carinata HOM05D003893 ORTHO05D017260 2.1e-24 115.9 86 80.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 8.1e-24 114.0 118 50.0
Sabra01G0120900 Salix brachista HOM05D003893 ORTHO05D005167 8.1e-24 114.0 118 50.0
BcaB07g32633 Brassica carinata HOM05D003893 ORTHO05D017260 1.8e-23 112.8 130 59.2
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 5.3e-23 111.3 117 49.6
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 1.5e-22 109.8 118 49.2
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 1.5e-22 109.8 118 46.6
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 2.6e-22 109.0 118 48.3
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 3.4e-22 108.6 118 47.5
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 3.4e-22 108.6 118 47.5
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 4.4e-22 108.2 117 47.0
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 4.4e-22 108.2 118 48.3
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 4.4e-22 108.2 118 45.8
BcaC09g49608 Brassica carinata HOM05D000205 ORTHO05D017260 4.9e-21 104.8 75 77.3
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 6.4e-21 104.4 116 45.7
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 7.1e-20 100.9 117 47.0
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 7.1e-20 100.9 118 44.1
Hund14479 Selenicereus undatus HOM05D003893 ORTHO05D005167 9.3e-20 100.5 114 44.7
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 3.5e-19 98.6 119 44.5
ClCG10G002220 Citrullus lanatus HOM05D003893 ORTHO05D005167 4.6e-19 98.2 119 44.5
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 6.0e-19 97.8 119 43.7
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 1.0e-18 97.1 119 44.5
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 1.0e-18 97.1 117 43.6
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 1.3e-18 96.7 113 45.1
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 5.1e-18 94.7 116 44.8
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 6.6e-18 94.4 117 42.7
Psat4g076000 Pisum sativum HOM05D003893 ORTHO05D005167 6.6e-18 94.4 117 46.2
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 8.7e-18 94.0 119 42.9
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 1.1e-17 93.6 119 42.0
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 2.5e-17 92.4 117 42.7
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 3.3e-17 92.0 115 43.5
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 7.3e-17 90.9 117 44.4
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 1.3e-16 90.1 115 41.7
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 1.6e-16 89.7 120 41.7
TPR.G25755 Trifolium pratense HOM05D003893 ORTHO05D005167 2.1e-16 89.4 117 44.4
Nitab4.5_0000500g0300 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.6e-16 88.6 116 38.8
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 3.6e-16 88.6 117 41.9
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 4.8e-16 88.2 115 42.6
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 4.8e-16 88.2 118 38.1
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 6.2e-16 87.8 117 41.9
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 8.1e-16 87.4 118 39.0
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.1e-15 87.0 117 44.4
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 3.1e-15 85.5 118 41.5
Nitab4.5_0009451g0070 Nicotiana tabacum HOM05D003893 ORTHO05D005167 3.1e-15 85.5 116 37.1
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 4.0e-15 85.1 120 39.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 9.0e-15 84.0 120 38.3
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 9.0e-15 84.0 123 39.0
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.5e-14 83.2 116 37.9
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 2.6e-14 82.4 118 42.4
VMungo0251G3747 Vigna mungo HOM05D003893 ORTHO05D005167 2.6e-14 82.4 118 40.7
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 9.9e-14 80.5 114 37.7
Migut.E01263 Erythranthe guttata HOM05D003893 ORTHO05D005167 9.9e-14 80.5 117 35.9
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 9.9e-14 80.5 117 35.9
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 1.3e-13 80.1 115 40.0
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 3.8e-13 78.6 120 37.5
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 4.9e-13 78.2 118 37.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 1.1e-12 77.0 120 37.5
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 1.4e-12 76.6 120 38.3
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 1.4e-12 76.6 103 42.7
SalBow1G0831 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.9e-12 76.3 118 35.6
CiPaw.11G072500 Carya illinoinensis HOM05D003893 ORTHO05D005167 7.1e-12 74.3 96 42.7
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 7.1e-12 74.3 81 50.6
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 1.6e-11 73.2 113 40.7
ATR0665G055 Amborella trichopoda HOM05D003893 ORTHO05D005167 3.5e-11 72.0 107 35.5
COL.COLO4_22133 Corchorus olitorius HOM05D003893 ORTHO05D005167 3.5e-11 72.0 141 32.6
Ah.07g199150 Amaranthus hybridus HOM05D003893 ORTHO05D017260 3.0e-10 68.9 81 40.7
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 3.1e-07 58.9 109 31.2
BraA01t02503Z Brassica rapa HOM05D003893 ORTHO05D017260 1.2e-06 57.0 26 100.0


User provided reference genes

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